KDM2B-DT

KDM2B divergent transcript, the group of Divergent transcripts

Basic information

Region (hg38): 12:121580360-121597226

Links

ENSG00000256742 ∙ NCBI:101928346 ∙ ∙ HGNC:53287 ∙ ∙ ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the KDM2B-DT gene.

• not provided (4 variants)
• not specified (1 variants)

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the KDM2B-DT gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense						0
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding			3	2		5
Total	0	0	3	2	0

Variants in KDM2B-DT

This is a list of pathogenic ClinVar variants found in the KDM2B-DT region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
12-121580827-CTG-C			Likely benign (Nov 01, 2022)
12-121580838-T-C		Inborn genetic diseases	Uncertain significance (Oct 03, 2023)
12-121580845-T-C			Uncertain significance (Mar 27, 2024)
12-121580846-TTC-T			Uncertain significance (Nov 07, 2022)
12-121580853-GCATGT-G		Neurodevelopmental disorder	Uncertain significance (Sep 22, 2024)
12-121580856-T-C		KDM2B-related disorder	Likely benign (Dec 01, 2022)
12-121580866-G-A		not specified	Uncertain significance (Mar 29, 2016)
12-121580888-TC-T			Uncertain significance (Mar 30, 2023)
12-121580915-G-A		KDM2B-related disorder	Benign (Sep 10, 2019)

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP