KIF26A
protein-codingkinesin family member 26A, the group of Kinesins
Gene summary
Predicted to enable microtubule binding activity. Involved in cerebral cortex development; regulation of neuron migration; and regulation of neuron projection development. Predicted to be located in cytosol. Implicated in complex cortical dysplasia with other brain malformations 11. [provided by Alliance of Genome Resources, Jun 2026]
MANE transcript
Inheritance
ClinVar variants
Top phenotype
gnomAD constraint
Max pathogenic AF
Genomic locus
External References & Databases
Transcript & Mutation Effects
hg38 • Region Span ~44.4 kbGenCC Phenotypes & Disease Associations
Curated gene-disease validity assertions and inheritance patterns
Inheritance Pattern: AR
Disease ID:MONDO:0859332
Submitter: Ambry Genetics
Inheritance Pattern: AR
Disease ID:MONDO:0859332
Submitter: PanelApp Australia
Inheritance Pattern: AR
Disease ID:MONDO:0859332
Submitter: Baylor College of Medicine Research Center
Inheritance Pattern: AR
Disease ID:MONDO:0859332
Submitter: Labcorp Genetics (formerly Invitae)
Inheritance Pattern: AR
Disease ID:MONDO:0000904
Submitter: ClinGen
KIF26A was first reported in relation to autosomal recessive congenital brain malformations in 2022 (Qian et al., PMID: 36228617) and with autosomal recessive congenital hydrocephalus with megacolon later that year (Almannai et al, PMID 36564622). Per criteria outlined by the ClinGen Lumping and Splitting Working Group, we found no significant difference in molecular mechanism, inheritance pattern or brain malformation phenotype between these conditions. Therefore, the these phenotypes have been lumped and curated together as autosomal recessive complex cortical dysplasia with other brain malformations (http://purl.obolibrary.org/obo/MONDO_0000904). Eight variants (5 missense, 3 frameshift) that have been reported in 7 probands in 2 publications (PMIDs: 36228617, 36564622) are included in this curation. Functional evidence supports a damaging impact for 4 of the missense variants, one of which is recurrent and seen in 3 of the 7 probands. Homozygous cases are present in gnomADv4.0.0 for 2 of these missense variants, raising the possibility of incomplete penetrance and/or variable expressivity. Notably, the three reported cases with loss of function variants have reported enteric involvement, while this has not been described in cases with missense variants. The mechanism of pathogenicity appears to loss of function. This gene-disease relationship is also supported by experimental evidence (PMID: 36228617). Expression analysis shows expression in all cortical regions throughout embryonic and postnatal development, with preferential expression in migrating excitatory neurons in the developing cerebral cortex. Kif26a depletion in the developing mouse brain disrupts the radial migration of cortical excitatory neurons and impairs neuronal localization, morphology, and corpus callosum development, but does not impact overall morphology of the corpus callosum. KIF26A knock-out hiPSC show shorter neurites and decreased migration from neurospheres than controls iPSC cells, which is rescued with exogenous KIF26A. In summary, there is strong evidence to support the relationship between KIF26A and autosomal recessive complex cortical dysplasia with other brain malformations. Three years must elapse from the first proposal of the assertion to reach a definitive classification without any valid contradictory evidence. We will re-evaluate this gene-disease relationship at that time to determine if an upgraded classification of definitive is warranted. This classification was approved by the ClinGen Brain Malformations GCEP on the meeting date 12 March 2024 (SOP Version 10).
Inheritance Pattern: AR
Disease ID:MONDO:0859332
Submitter: Ambry Genetics
Clinical Genomic Database (CGD)
Manifestation: Craniofacial; Neurologic
Intervention: General
Rationale: Genetic knowledge may be beneficial related to issues such as selection of optimal supportive care, informed medical decision-making, prognostic considerations, and avoidance of unnecessary testing
ClinVar Associated Diseases & Phenotypes
Reported disease conditions connected to KIF26A variants in ClinVar
ClinVar Variants & Pathogenicity by Type
Statistics based on transcript NM_015656.2. Only rare variants are included.
We include only reliable ClinVar variants with their consequences to MANE Select, MANE Plus Clinical transcripts, or transcripts with TSL equal to 1. Click a count to filter the variants table below.
Slight differences between displayed counts and ClinVar may occur due to a different transcript/consequence chosen by our variant effect predictor, or because we classify Benign/Likely benign as Likely benign and Pathogenic/Likely pathogenic as Likely pathogenic.
| Effect | PathogenicP | Likely pathogenicLP | VUS | Likely benignLB | BenignB | Sum |
|---|---|---|---|---|---|---|
| synonymous | 2 | 57 | 1 | 60 | ||
| missense | 2 | 1 | 517 | 26 | 546 | |
| nonsense | 6 | 2 | 8 | |||
| start loss | 0 | |||||
| frameshift | 3 | 3 | 2 | 8 | ||
| splice donor/acceptor (+/-2bp) | 1 | 1 | ||||
| Total | 5 | 10 | 524 | 83 | 1 | 623 |
Highest pathogenic variant AF is 0.0022230507
Transcript Catalog
Annotated transcript isoforms across RefSeq and Ensembl databases
| Transcript ID | Source | Protein ID | Coding Exons | MANE Status |
|---|---|---|---|---|
| RefSeq | NP_056471.1 | 15 | MANE Select | |
| Ensembl | ENSP00000388241.2 | 15 | MANE Select | |
| Ensembl | ENSP00000325452.7 | 13 | Standard | |
| Ensembl | ENSP00000513129.1 | 15 | Standard |
Gene Ontology (GO) Annotations & Pathways
Biological processes, molecular functions, cellular components and pathways
Pathways ConsensusPathDB
- Vesicle-mediated transport
- Membrane Trafficking
- Kinesins
- Factors involved in megakaryocyte development and platelet production
- Hemostasis
Biological Process
- regulation of cell growth by extracellular stimulus
- retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
- microtubule-based movement
- negative regulation of signal transduction
- antigen processing and presentation of exogenous peptide antigen via MHC class II
Molecular Function
- microtubule motor activity
- ATP binding
- microtubule binding
- ATPase activity
Cellular Component
- cytosol
- kinesin complex
- microtubule
gnomAD Constraint
Source:
- Gene type
- protein_coding
- Transcript type
- protein_coding
- Transcript
- ENST00000423312
- Coding exons
- 15
- Length
- 42172
- Individuals with no LoFs
- 123958
- Homozygous LoFs
- 0
- Heterozygous LoFs
- 21
- Defined
- 123979
- p
- 0.0000847
| Z-Score | Observed | Expected | Observed/Expected | Mutation Rate | Total Possible | |
|---|---|---|---|---|---|---|
| Missense | 0.0892 | 1119 | 1.13e+3 | 0.993 | 0.0000800 | 11571 |
| Missense (PolyPhen) | 305 | 359.73 | 0.84787 | 3736 | ||
| Synonymous | -2.46 | 585 | 514 | 1.14 | 0.0000399 | 4265 |
| Loss of Function | 4.62 | 16 | 51.9 | 0.308 | 0.00000307 | 572 |
Population LoF Frequency
| Population | CAF | p-value | Status |
|---|---|---|---|
| African | 0.000092 | 0.000065 | rare |
| Latino/Admixed American | 0.00021 | 0.00020 | rare |
| Ashkenazi Jewish | 0 | 0.0 | absent |
| East Asian | 0.00018 | 0.00017 | rare |
| Finnish | 0.00010 | 0.000093 | rare |
| European (Non-Finnish) | 0.000074 | 0.000063 | rare |
| South Asian | 0 | 0.0 | absent |
| Other | 0.00017 | 0.00017 | rare |
dbNSFP Gene Annotations
Source:
- Function
- FUNCTION: Atypical kinesin that plays a key role in enteric neuron development. Acts by repressing a cell growth signaling pathway in the enteric nervous system development, possibly via its interaction with GRB2 that prevents GRB2-binding to SHC, thereby attenating the GDNF-Ret signaling. Binds to microtubules but lacks microtubule-based motility due to the absence of ATPase activity (By similarity). {ECO:0000250}.;
Essentials
- Essential (CRISPR)
- N
- Essential (CRISPR2)
- N
- Essential (gene trap)
- N
- Indispensability pred.
- N
- Indispensability score
- 0.497
Gene Damage Prediction
| All | Recessive | Dominant | |
|---|---|---|---|
| Mendelian | Medium | Medium | Medium |
| Primary Immunodeficiency | Medium | Medium | Medium |
| Cancer | Medium | Medium | Medium |