KIF26A

protein-coding

kinesin family member 26A, the group of Kinesins

Gene summary

Predicted to enable microtubule binding activity. Involved in cerebral cortex development; regulation of neuron migration; and regulation of neuron projection development. Predicted to be located in cytosol. Implicated in complex cortical dysplasia with other brain malformations 11. [provided by Alliance of Genome Resources, Jun 2026]

MANE transcript

NM_015656.2

Inheritance

AR

ClinVar variants

P:15U:524B:84

Top phenotype

Cortical dysplasia, complex, with other brain malformations 11

gnomAD constraint

pLI —, LoF o/e 0.31

Max pathogenic AF

—

Genomic locus

chr14:104,136,454-104,180,894

External References & Databases

Transcript & Mutation Effects

hg38 • Region Span ~44.4 kb
Loading mutation effect viewer...

GenCC Phenotypes & Disease Associations

Curated gene-disease validity assertions and inheritance patterns

cortical dysplasia, complex, with other brain malformations 11LIMITED

Inheritance Pattern: AR

Disease ID:MONDO:0859332

Submitter: Ambry Genetics

cortical dysplasia, complex, with other brain malformations 11STRONG

Inheritance Pattern: AR

Disease ID:MONDO:0859332

Submitter: PanelApp Australia

cortical dysplasia, complex, with other brain malformations 11MODERATE

Inheritance Pattern: AR

Disease ID:MONDO:0859332

Submitter: Baylor College of Medicine Research Center

cortical dysplasia, complex, with other brain malformations 11STRONG

Inheritance Pattern: AR

Disease ID:MONDO:0859332

Submitter: Labcorp Genetics (formerly Invitae)

complex cortical dysplasia with other brain malformationsSTRONG

Inheritance Pattern: AR

Disease ID:MONDO:0000904

Submitter: ClinGen

KIF26A was first reported in relation to autosomal recessive congenital brain malformations in 2022 (Qian et al., PMID: 36228617) and with autosomal recessive congenital hydrocephalus with megacolon later that year (Almannai et al, PMID 36564622). Per criteria outlined by the ClinGen Lumping and Splitting Working Group, we found no significant difference in molecular mechanism, inheritance pattern or brain malformation phenotype between these conditions. Therefore, the these phenotypes have been lumped and curated together as autosomal recessive complex cortical dysplasia with other brain malformations (http://purl.obolibrary.org/obo/MONDO_0000904). Eight variants (5 missense, 3 frameshift) that have been reported in 7 probands in 2 publications (PMIDs: 36228617, 36564622) are included in this curation. Functional evidence supports a damaging impact for 4 of the missense variants, one of which is recurrent and seen in 3 of the 7 probands. Homozygous cases are present in gnomADv4.0.0 for 2 of these missense variants, raising the possibility of incomplete penetrance and/or variable expressivity. Notably, the three reported cases with loss of function variants have reported enteric involvement, while this has not been described in cases with missense variants. The mechanism of pathogenicity appears to loss of function. This gene-disease relationship is also supported by experimental evidence (PMID: 36228617). Expression analysis shows expression in all cortical regions throughout embryonic and postnatal development, with preferential expression in migrating excitatory neurons in the developing cerebral cortex. Kif26a depletion in the developing mouse brain disrupts the radial migration of cortical excitatory neurons and impairs neuronal localization, morphology, and corpus callosum development, but does not impact overall morphology of the corpus callosum. KIF26A knock-out hiPSC show shorter neurites and decreased migration from neurospheres than controls iPSC cells, which is rescued with exogenous KIF26A. In summary, there is strong evidence to support the relationship between KIF26A and autosomal recessive complex cortical dysplasia with other brain malformations. Three years must elapse from the first proposal of the assertion to reach a definitive classification without any valid contradictory evidence. We will re-evaluate this gene-disease relationship at that time to determine if an upgraded classification of definitive is warranted. This classification was approved by the ClinGen Brain Malformations GCEP on the meeting date 12 March 2024 (SOP Version 10).

cortical dysplasia, complex, with other brain malformations 11STRONG

Inheritance Pattern: AR

Disease ID:MONDO:0859332

Submitter: Ambry Genetics

Clinical Genomic Database (CGD)

Cortical dysplasia, complex, with other brain malformations 11AR

Manifestation: Craniofacial; Neurologic

Intervention: General

Rationale: Genetic knowledge may be beneficial related to issues such as selection of optimal supportive care, informed medical decision-making, prognostic considerations, and avoidance of unnecessary testing

Refs: 36228617Source: CGD (NHGRI)

ClinVar Associated Diseases & Phenotypes

Reported disease conditions connected to KIF26A variants in ClinVar

5 Conditions Cataloged
not specifiedTotal: 534
not providedTotal: 114
Cortical dysplasia, complex, with other brain malformations 11Total: 23
KIF26A-related conditionTotal: 6
EBV-positive nodal T- and NK-cell lymphomaTotal: 1

ClinVar Variants & Pathogenicity by Type

Statistics based on transcript NM_015656.2. Only rare variants are included.

We include only reliable ClinVar variants with their consequences to MANE Select, MANE Plus Clinical transcripts, or transcripts with TSL equal to 1. Click a count to filter the variants table below.

Slight differences between displayed counts and ClinVar may occur due to a different transcript/consequence chosen by our variant effect predictor, or because we classify Benign/Likely benign as Likely benign and Pathogenic/Likely pathogenic as Likely pathogenic.

EffectPLPVUSLBBSum
synonymous
2
clinvar
57
clinvar
1
clinvar
60
missense
2
clinvar
1
clinvar
517
clinvar
26
clinvar
546
nonsense
6
clinvar
2
clinvar
8
start loss
0
frameshift
3
clinvar
3
clinvar
2
clinvar
8
splice donor/acceptor (+/-2bp)
1
clinvar
1
Total510524831623

Highest pathogenic variant AF is 0.0022230507

Loading ClinVar variants...

Transcript Catalog

Annotated transcript isoforms across RefSeq and Ensembl databases

Showing 4 of 8 transcripts
Transcript IDSourceProtein IDCoding ExonsMANE Status
NM_015656.2RefSeqNP_056471.115MANE Select
ENST00000423312.7EnsemblENSP00000388241.215MANE Select
ENST00000315264.7EnsemblENSP00000325452.713Standard
ENST00000697132.1EnsemblENSP00000513129.115Standard

Gene Ontology (GO) Annotations & Pathways

Biological processes, molecular functions, cellular components and pathways

Pathways ConsensusPathDB

  • Vesicle-mediated transport
  • Membrane Trafficking
  • Kinesins
  • Factors involved in megakaryocyte development and platelet production
  • Hemostasis

Biological Process

  • regulation of cell growth by extracellular stimulus
  • retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
  • microtubule-based movement
  • negative regulation of signal transduction
  • antigen processing and presentation of exogenous peptide antigen via MHC class II

Molecular Function

  • microtubule motor activity
  • ATP binding
  • microtubule binding
  • ATPase activity

Cellular Component

  • cytosol
  • kinesin complex
  • microtubule

gnomAD Constraint

Source: gnomAD

Gene type
protein_coding
Transcript type
protein_coding
Transcript
ENST00000423312
Coding exons
15
Length
42172
Individuals with no LoFs
123958
Homozygous LoFs
0
Heterozygous LoFs
21
Defined
123979
p
0.0000847
Z-ScoreObservedExpectedObserved/ExpectedMutation RateTotal Possible
Missense0.089211191.13e+30.9930.000080011571
Missense (PolyPhen)305359.730.847873736
Synonymous-2.465855141.140.00003994265
Loss of Function4.621651.90.3080.00000307572

Population LoF Frequency

PopulationCAFp-valueStatus
African0.0000920.000065rare
Latino/Admixed American0.000210.00020rare
Ashkenazi Jewish00.0absent
East Asian0.000180.00017rare
Finnish0.000100.000093rare
European (Non-Finnish)0.0000740.000063rare
South Asian00.0absent
Other0.000170.00017rare

dbNSFP Gene Annotations

Source: dbNSFP

Function
FUNCTION: Atypical kinesin that plays a key role in enteric neuron development. Acts by repressing a cell growth signaling pathway in the enteric nervous system development, possibly via its interaction with GRB2 that prevents GRB2-binding to SHC, thereby attenating the GDNF-Ret signaling. Binds to microtubules but lacks microtubule-based motility due to the absence of ATPase activity (By similarity). {ECO:0000250}.;

Essentials

Essential (CRISPR)
N
Essential (CRISPR2)
N
Essential (gene trap)
N
Indispensability pred.
N
Indispensability score
0.497

Gene Damage Prediction

AllRecessiveDominant
MendelianMediumMediumMedium
Primary ImmunodeficiencyMediumMediumMedium
CancerMediumMediumMedium
For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.