KIF9

kinesin family member 9, the group of Kinesins

Basic information

Region (hg38): 3:47227998-47283451

Links

ENSG00000088727NCBI:64147OMIM:607910HGNC:16666Uniprot:Q9HAQ2AlphaFoldGenCCjaxSfariGnomADPubmedClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the KIF9 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the KIF9 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type Pathogenic Likely pathogenic VUS Likely benign Benign Sum
synonymous
1
clinvar
1
missense
40
clinvar
40
nonsense
0
start loss
0
frameshift
0
inframe indel
0
splice donor/acceptor (+/-2bp)
0
splice region
0
non coding
0
Total 0 0 40 1 0

Variants in KIF9

This is a list of pathogenic ClinVar variants found in the KIF9 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position Type Phenotype Significance ClinVar
3-47228702-G-T not specified Uncertain significance (Oct 25, 2023)3114994
3-47235544-A-G not specified Uncertain significance (Mar 14, 2024)3114993
3-47236044-A-G not specified Uncertain significance (May 03, 2023)2542691
3-47236071-C-G not specified Uncertain significance (Jul 09, 2021)2399825
3-47236105-T-A not specified Uncertain significance (Oct 25, 2023)3114992
3-47236108-C-G not specified Uncertain significance (Jan 18, 2023)2476589
3-47236533-G-A not specified Uncertain significance (Jun 22, 2023)2605253
3-47236556-A-G not specified Uncertain significance (Mar 15, 2024)3288665
3-47236563-G-T not specified Uncertain significance (Jun 07, 2023)2558455
3-47240815-A-G not specified Uncertain significance (Dec 02, 2022)2331821
3-47240820-C-A not specified Uncertain significance (Sep 22, 2023)3114991
3-47240823-C-G not specified Uncertain significance (Oct 03, 2022)3114990
3-47240856-C-G not specified Uncertain significance (May 30, 2024)3288663
3-47240860-C-T not specified Uncertain significance (Feb 28, 2023)2461205
3-47240872-T-C not specified Uncertain significance (Aug 15, 2023)2595113
3-47240901-T-A not specified Uncertain significance (Aug 15, 2023)2619298
3-47240908-C-T not specified Uncertain significance (May 31, 2024)3288664
3-47240989-A-G not specified Uncertain significance (Sep 29, 2023)3114989
3-47241004-G-A not specified Uncertain significance (Feb 06, 2024)3114988
3-47243061-G-A not specified Uncertain significance (Jun 30, 2022)3114987
3-47243084-G-A not specified Uncertain significance (Mar 25, 2024)3288666
3-47243121-G-A not specified Uncertain significance (May 30, 2022)2307273
3-47244803-T-C not specified Uncertain significance (Jan 24, 2024)3114986
3-47244807-A-G not specified Uncertain significance (Aug 01, 2022)2206043
3-47244820-C-G not specified Uncertain significance (Apr 09, 2024)3288662

GnomAD

Source: gnomAD

GeneTypeBio TypeTranscript Coding Exons Length
KIF9protein_codingprotein_codingENST00000335044 2055426
pLI Probability
LOF Intolerant
pRec Probability
LOF Recessive
Individuals with
no LOFs
Individuals with
Homozygous LOFs
Individuals with
Heterozygous LOFs
Defined p
5.48e-220.010412558801601257480.000636
Z-Score Observed Expected Observed/Expected Mutation Rate Total Possible in Transcript
Missense0.5764184520.9240.00002525218
Missense in Polyphen108129.760.832331522
Synonymous0.8261581720.9200.000009441476
Loss of Function0.8053641.60.8650.00000195511

LoF frequencies by population

EthnicitySum of pLOFs p
African & African-American0.001950.00194
Ashkenazi Jewish0.0001980.000198
East Asian0.002120.00212
Finnish0.00004620.0000462
European (Non-Finnish)0.0003970.000396
Middle Eastern0.002120.00212
South Asian0.0003990.000392
Other0.0006540.000652

dbNSFP

Source: dbNSFP

Pathway
Vesicle-mediated transport;Membrane Trafficking;Kinesins;Factors involved in megakaryocyte development and platelet production;Hemostasis;COPI-dependent Golgi-to-ER retrograde traffic;Golgi-to-ER retrograde transport;Intra-Golgi and retrograde Golgi-to-ER traffic (Consensus)

Intolerance Scores

loftool
0.975
rvis_EVS
0.2
rvis_percentile_EVS
67.46

Haploinsufficiency Scores

pHI
0.175
hipred
N
hipred_score
0.197
ghis
0.499

Essentials

essential_gene_CRISPR
N
essential_gene_CRISPR2
N
essential_gene_gene_trap
N
gene_indispensability_pred
N
gene_indispensability_score
0.357

Gene Damage Prediction

AllRecessiveDominant
MendelianMediumMediumMedium
Primary ImmunodeficiencyMediumMediumMedium
CancerMediumMediumMedium

Mouse Genome Informatics

Gene name
Kif9
Phenotype

Gene ontology

Biological process
microtubule-based movement;extracellular matrix disassembly;regulation of podosome assembly;organelle disassembly
Cellular component
podosome;cytoplasm;kinesin complex;microtubule;vesicle
Molecular function
microtubule motor activity;protein binding;ATP binding;microtubule binding;ATPase activity;protein dimerization activity