KIF9
Basic information
Region (hg38): 3:47227998-47283451
Links
Phenotypes
GenCC
Source:
ClinVar
This is a list of variants' phenotypes submitted to
Variants pathogenicity by type
Statistics on ClinVar variants can assist in determining whether a specific variant type in the KIF9 gene is commonly pathogenic or not.
In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.
Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.
Variant type | Pathogenic | Likely pathogenic | VUS | Likely benign | Benign | Sum |
---|---|---|---|---|---|---|
synonymous | 1 | |||||
missense | 40 | 40 | ||||
nonsense | 0 | |||||
start loss | 0 | |||||
frameshift | 0 | |||||
inframe indel | 0 | |||||
splice donor/acceptor (+/-2bp) | 0 | |||||
splice region | 0 | |||||
non coding | 0 | |||||
Total | 0 | 0 | 40 | 1 | 0 |
Variants in KIF9
This is a list of pathogenic ClinVar variants found in the KIF9 region.
You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.
Position | Type | Phenotype | Significance | ClinVar |
---|---|---|---|---|
3-47228702-G-T | not specified | Uncertain significance (Oct 25, 2023) | ||
3-47235544-A-G | not specified | Uncertain significance (Mar 14, 2024) | ||
3-47236044-A-G | not specified | Uncertain significance (May 03, 2023) | ||
3-47236071-C-G | not specified | Uncertain significance (Jul 09, 2021) | ||
3-47236105-T-A | not specified | Uncertain significance (Oct 25, 2023) | ||
3-47236108-C-G | not specified | Uncertain significance (Jan 18, 2023) | ||
3-47236533-G-A | not specified | Uncertain significance (Jun 22, 2023) | ||
3-47236556-A-G | not specified | Uncertain significance (Mar 15, 2024) | ||
3-47236563-G-T | not specified | Uncertain significance (Jun 07, 2023) | ||
3-47240815-A-G | not specified | Uncertain significance (Dec 02, 2022) | ||
3-47240820-C-A | not specified | Uncertain significance (Sep 22, 2023) | ||
3-47240823-C-G | not specified | Uncertain significance (Oct 03, 2022) | ||
3-47240856-C-G | not specified | Uncertain significance (May 30, 2024) | ||
3-47240860-C-T | not specified | Uncertain significance (Feb 28, 2023) | ||
3-47240872-T-C | not specified | Uncertain significance (Aug 15, 2023) | ||
3-47240901-T-A | not specified | Uncertain significance (Aug 15, 2023) | ||
3-47240908-C-T | not specified | Uncertain significance (May 31, 2024) | ||
3-47240989-A-G | not specified | Uncertain significance (Sep 29, 2023) | ||
3-47241004-G-A | not specified | Uncertain significance (Feb 06, 2024) | ||
3-47243061-G-A | not specified | Uncertain significance (Jun 30, 2022) | ||
3-47243084-G-A | not specified | Uncertain significance (Mar 25, 2024) | ||
3-47243121-G-A | not specified | Uncertain significance (May 30, 2022) | ||
3-47244803-T-C | not specified | Uncertain significance (Jan 24, 2024) | ||
3-47244807-A-G | not specified | Uncertain significance (Aug 01, 2022) | ||
3-47244820-C-G | not specified | Uncertain significance (Apr 09, 2024) |
GnomAD
Source:
Gene | Type | Bio Type | Transcript | Coding Exons | Length |
---|---|---|---|---|---|
KIF9 | protein_coding | protein_coding | ENST00000335044 | 20 | 55426 |
pLI Probability LOF Intolerant | pRec Probability LOF Recessive | Individuals with no LOFs | Individuals with Homozygous LOFs | Individuals with Heterozygous LOFs | Defined | p |
---|---|---|---|---|---|---|
5.48e-22 | 0.0104 | 125588 | 0 | 160 | 125748 | 0.000636 |
Z-Score | Observed | Expected | Observed/Expected | Mutation Rate | Total Possible in Transcript | |
---|---|---|---|---|---|---|
Missense | 0.576 | 418 | 452 | 0.924 | 0.0000252 | 5218 |
Missense in Polyphen | 108 | 129.76 | 0.83233 | 1522 | ||
Synonymous | 0.826 | 158 | 172 | 0.920 | 0.00000944 | 1476 |
Loss of Function | 0.805 | 36 | 41.6 | 0.865 | 0.00000195 | 511 |
LoF frequencies by population
Ethnicity | Sum of pLOFs | p |
---|---|---|
African & African-American | 0.00195 | 0.00194 |
Ashkenazi Jewish | 0.000198 | 0.000198 |
East Asian | 0.00212 | 0.00212 |
Finnish | 0.0000462 | 0.0000462 |
European (Non-Finnish) | 0.000397 | 0.000396 |
Middle Eastern | 0.00212 | 0.00212 |
South Asian | 0.000399 | 0.000392 |
Other | 0.000654 | 0.000652 |
dbNSFP
Source:
- Pathway
- Vesicle-mediated transport;Membrane Trafficking;Kinesins;Factors involved in megakaryocyte development and platelet production;Hemostasis;COPI-dependent Golgi-to-ER retrograde traffic;Golgi-to-ER retrograde transport;Intra-Golgi and retrograde Golgi-to-ER traffic
(Consensus)
Intolerance Scores
- loftool
- 0.975
- rvis_EVS
- 0.2
- rvis_percentile_EVS
- 67.46
Haploinsufficiency Scores
- pHI
- 0.175
- hipred
- N
- hipred_score
- 0.197
- ghis
- 0.499
Essentials
- essential_gene_CRISPR
- N
- essential_gene_CRISPR2
- N
- essential_gene_gene_trap
- N
- gene_indispensability_pred
- N
- gene_indispensability_score
- 0.357
Gene Damage Prediction
All | Recessive | Dominant | |
---|---|---|---|
Mendelian | Medium | Medium | Medium |
Primary Immunodeficiency | Medium | Medium | Medium |
Cancer | Medium | Medium | Medium |
Mouse Genome Informatics
- Gene name
- Kif9
- Phenotype
Gene ontology
- Biological process
- microtubule-based movement;extracellular matrix disassembly;regulation of podosome assembly;organelle disassembly
- Cellular component
- podosome;cytoplasm;kinesin complex;microtubule;vesicle
- Molecular function
- microtubule motor activity;protein binding;ATP binding;microtubule binding;ATPase activity;protein dimerization activity