KLHL14

kelch like family member 14, the group of BTB domain containing|Kelch like

Basic information

Region (hg38): 18:32672673-32773023

Links

ENSG00000197705 ∙ NCBI:57565 ∙ OMIM:613772 ∙ HGNC:29266 ∙ Uniprot:Q9P2G3 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the KLHL14 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the KLHL14 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			27			27
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	27	0	0

Variants in KLHL14

This is a list of pathogenic ClinVar variants found in the KLHL14 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
18-32677304-C-T		not specified	Uncertain significance (Nov 09, 2021)
18-32680201-C-T		not specified	Uncertain significance (Aug 02, 2022)
18-32680210-A-G		not specified	Uncertain significance (May 15, 2024)
18-32680309-T-G		not specified	Uncertain significance (Dec 21, 2022)
18-32680438-G-C		not specified	Uncertain significance (Feb 22, 2023)
18-32680483-C-T		not specified	Uncertain significance (Jan 09, 2024)
18-32680495-G-A		not specified	Uncertain significance (Jun 16, 2024)
18-32680517-C-T		not specified	Uncertain significance (Nov 03, 2022)
18-32687194-C-T		not specified	Uncertain significance (Mar 04, 2024)
18-32695481-C-G		not specified	Uncertain significance (Oct 19, 2021)
18-32695496-C-T		not specified	Uncertain significance (Aug 07, 2024)
18-32695523-C-T		not specified	Uncertain significance (Oct 29, 2021)
18-32741970-G-T		not specified	Uncertain significance (Jan 26, 2022)
18-32769727-C-G		not specified	Uncertain significance (Feb 16, 2023)
18-32769847-C-G		not specified	Uncertain significance (Dec 17, 2023)
18-32769856-G-C		not specified	Uncertain significance (Apr 12, 2022)
18-32769882-G-A		not specified	Uncertain significance (Apr 25, 2022)
18-32769893-C-G		not specified	Uncertain significance (Oct 26, 2021)
18-32769907-G-A		not specified	Uncertain significance (Dec 04, 2024)
18-32769913-A-T		not specified	Uncertain significance (Jan 09, 2024)
18-32769915-T-C		not specified	Uncertain significance (Apr 06, 2023)
18-32769955-C-T		not specified	Uncertain significance (Jun 19, 2024)
18-32769991-T-A		Neoplasm	- (-)
18-32770132-C-G		Neoplasm	- (-)
18-32770185-C-A		not specified	Uncertain significance (Nov 13, 2023)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
KLHL14	protein_coding	protein_coding	ENST00000359358	8	100392

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.0535	0.946	125734	0	14	125748	0.0000557

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	1.60	275	361	0.762	0.0000181	4075
Missense in Polyphen		98	150.98	0.64911		1638
Synonymous	-1.22	175	156	1.12	0.00000814	1253
Loss of Function	3.63	8	29.1	0.275	0.00000147	316

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.000182	0.000182
Ashkenazi Jewish	0.00	0.00
East Asian	0.0000545	0.0000544
Finnish	0.0000462	0.0000462
European (Non-Finnish)	0.0000623	0.0000615
Middle Eastern	0.0000545	0.0000544
South Asian	0.00	0.00
Other	0.00	0.00

dbNSFP

Source: dbNSFP

Intolerance Scores

• loftool: 0.527
• rvis_EVS: -0.98
• rvis_percentile_EVS: 8.75

Haploinsufficiency Scores

• pHI: 0.498
• hipred: Y
• hipred_score: 0.771
• ghis: 0.604

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.0286

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Klhl14
• Phenotype: immune system phenotype; mortality/aging (the observable characteristics related to the ability of a mammalian organism to live and age that are manifested throughout development and life span); hematopoietic system phenotype

Gene ontology

• Cellular component: endoplasmic reticulum;endoplasmic reticulum membrane;cytosol;actin cytoskeleton;aggresome;neuron projection;neuronal cell body