KLHL18

kelch like family member 18, the group of BTB domain containing|Kelch like

Basic information

Region (hg38): 3:47282917-47346816

Links

ENSG00000114648 ∙ NCBI:23276 ∙ OMIM:619926 ∙ HGNC:29120 ∙ Uniprot:O94889 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the KLHL18 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the KLHL18 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			24			24
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	24	0	0

Variants in KLHL18

This is a list of pathogenic ClinVar variants found in the KLHL18 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
3-47282982-C-T		not specified	Uncertain significance (Apr 28, 2022)
3-47283002-G-A		not specified	Uncertain significance (May 31, 2023)
3-47283026-C-T		not specified	Uncertain significance (Dec 06, 2021)
3-47283029-A-G		not specified	Uncertain significance (May 25, 2022)
3-47283080-G-A		not specified	Uncertain significance (Apr 18, 2023)
3-47322683-G-A		not specified	Uncertain significance (Jun 24, 2022)
3-47330000-A-T		not specified	Uncertain significance (Jan 23, 2024)
3-47330021-G-A		not specified	Uncertain significance (Jun 27, 2023)
3-47330099-G-A		not specified	Uncertain significance (Dec 13, 2021)
3-47330108-C-A		not specified	Uncertain significance (Apr 04, 2023)
3-47330118-G-A		not specified	Uncertain significance (Mar 01, 2024)
3-47330132-G-A		not specified	Uncertain significance (Jan 26, 2022)
3-47333169-G-T		not specified	Uncertain significance (Mar 19, 2024)
3-47333209-C-A		not specified	Uncertain significance (Apr 11, 2023)
3-47333244-C-A		not specified	Uncertain significance (Dec 18, 2023)
3-47333272-A-G		not specified	Uncertain significance (Jan 03, 2024)
3-47334727-G-A		not specified	Uncertain significance (Sep 22, 2023)
3-47336564-G-A		not specified	Uncertain significance (Jun 04, 2024)
3-47336577-A-G		not specified	Uncertain significance (Feb 17, 2024)
3-47336618-C-T		not specified	Uncertain significance (Apr 06, 2024)
3-47336642-G-C		not specified	Uncertain significance (Mar 20, 2024)
3-47336748-G-A		not specified	Uncertain significance (Jan 16, 2024)
3-47340573-G-A		not specified	Uncertain significance (Sep 13, 2023)
3-47340624-G-C		not specified	Uncertain significance (Jan 17, 2024)
3-47340670-C-T		not specified	Uncertain significance (Feb 27, 2024)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
KLHL18	protein_coding	protein_coding	ENST00000232766	10	63900

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.0782	0.922	125726	0	22	125748	0.0000875

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	2.01	263	372	0.707	0.0000229	3764
Missense in Polyphen		101	144.31	0.69986		1362
Synonymous	0.788	136	148	0.918	0.00000966	1141
Loss of Function	3.43	7	25.8	0.271	0.00000116	292

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.000116	0.000116
Ashkenazi Jewish	0.00	0.00
East Asian	0.0000552	0.0000544
Finnish	0.00	0.00
European (Non-Finnish)	0.000116	0.000105
Middle Eastern	0.0000552	0.0000544
South Asian	0.0000980	0.0000980
Other	0.000326	0.000326

dbNSFP

Source: dbNSFP

Recessive Scores

• pRec: 0.109

Intolerance Scores

• rvis_EVS: -0.89
• rvis_percentile_EVS: 10.3

Haploinsufficiency Scores

• pHI: 0.411
• hipred: Y
• hipred_score: 0.783
• ghis: 0.611

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: E
• gene_indispensability_score: 0.925

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Klhl18
• Phenotype: behavior/neurological phenotype (the observable actions or reactions of mammalian organisms that are manifested through development and lifespan); hearing/vestibular/ear phenotype

Gene ontology

• Molecular function: protein binding