KRT33A
Basic information
Region (hg38): 17:41346092-41350828
Previous symbols: [ "KRTHA3A" ]
Links
Phenotypes
GenCC
Source:
ClinVar
This is a list of variants' phenotypes submitted to
Variants pathogenicity by type
Statistics on ClinVar variants can assist in determining whether a specific variant type in the KRT33A gene is commonly pathogenic or not.
In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.
Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.
Variant type | Pathogenic | Likely pathogenic | VUS | Likely benign | Benign | Sum |
---|---|---|---|---|---|---|
synonymous | 0 | |||||
missense | 42 | 42 | ||||
nonsense | 0 | |||||
start loss | 0 | |||||
frameshift | 0 | |||||
inframe indel | 0 | |||||
splice donor/acceptor (+/-2bp) | 0 | |||||
splice region | 0 | |||||
non coding | 0 | |||||
Total | 0 | 0 | 42 | 0 | 0 |
Variants in KRT33A
This is a list of pathogenic ClinVar variants found in the KRT33A region.
You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.
Position | Type | Phenotype | Significance | ClinVar |
---|---|---|---|---|
17-41346151-G-A | not specified | Uncertain significance (Mar 31, 2022) | ||
17-41346156-C-T | not specified | Uncertain significance (Sep 27, 2022) | ||
17-41346180-C-T | not specified | Uncertain significance (Jun 11, 2024) | ||
17-41346208-T-C | not specified | Uncertain significance (May 27, 2022) | ||
17-41346225-T-C | not specified | Uncertain significance (Apr 07, 2023) | ||
17-41346455-C-T | not specified | Uncertain significance (Apr 27, 2024) | ||
17-41346458-C-T | not specified | Uncertain significance (Apr 22, 2024) | ||
17-41346459-G-T | not specified | Uncertain significance (Aug 20, 2023) | ||
17-41346505-G-T | not specified | Uncertain significance (Feb 01, 2023) | ||
17-41346512-C-T | not specified | Uncertain significance (Feb 06, 2023) | ||
17-41346531-C-A | not specified | Uncertain significance (Dec 15, 2023) | ||
17-41346547-T-C | not specified | Uncertain significance (May 30, 2024) | ||
17-41346559-C-A | not specified | Uncertain significance (Jun 16, 2023) | ||
17-41346607-T-C | not specified | Uncertain significance (Feb 06, 2023) | ||
17-41346629-G-A | not specified | Uncertain significance (Aug 16, 2021) | ||
17-41346667-C-T | not specified | Uncertain significance (Aug 10, 2023) | ||
17-41346867-C-T | not specified | Uncertain significance (May 31, 2023) | ||
17-41346885-C-T | not specified | Uncertain significance (Aug 10, 2021) | ||
17-41346963-C-T | not specified | Uncertain significance (Feb 09, 2023) | ||
17-41347066-T-G | not specified | Uncertain significance (Jul 06, 2021) | ||
17-41347092-C-T | not specified | Uncertain significance (Dec 01, 2022) | ||
17-41347122-C-T | not specified | Uncertain significance (Apr 08, 2022) | ||
17-41347152-T-C | not specified | Uncertain significance (Sep 26, 2022) | ||
17-41347188-C-T | not specified | Uncertain significance (Apr 19, 2023) | ||
17-41347189-G-A | not specified | Uncertain significance (Oct 27, 2021) |
GnomAD
Source:
Gene | Type | Bio Type | Transcript | Coding Exons | Length |
---|---|---|---|---|---|
KRT33A | protein_coding | protein_coding | ENST00000007735 | 7 | 4721 |
pLI Probability LOF Intolerant | pRec Probability LOF Recessive | Individuals with no LOFs | Individuals with Homozygous LOFs | Individuals with Heterozygous LOFs | Defined | p |
---|---|---|---|---|---|---|
3.19e-17 | 0.00133 | 125596 | 1 | 151 | 125748 | 0.000605 |
Z-Score | Observed | Expected | Observed/Expected | Mutation Rate | Total Possible in Transcript | |
---|---|---|---|---|---|---|
Missense | -1.02 | 294 | 249 | 1.18 | 0.0000167 | 2618 |
Missense in Polyphen | 84 | 81.708 | 1.028 | 913 | ||
Synonymous | -0.411 | 118 | 112 | 1.05 | 0.00000741 | 815 |
Loss of Function | -0.823 | 23 | 19.1 | 1.20 | 9.06e-7 | 211 |
LoF frequencies by population
Ethnicity | Sum of pLOFs | p |
---|---|---|
African & African-American | 0.00125 | 0.00125 |
Ashkenazi Jewish | 0.000198 | 0.000198 |
East Asian | 0.000489 | 0.000489 |
Finnish | 0.0000924 | 0.0000924 |
European (Non-Finnish) | 0.000565 | 0.000563 |
Middle Eastern | 0.000489 | 0.000489 |
South Asian | 0.00118 | 0.00114 |
Other | 0.000988 | 0.000978 |
dbNSFP
Source:
- Pathway
- Estrogen signaling pathway - Homo sapiens (human);Keratinization;Developmental Biology
(Consensus)
Recessive Scores
- pRec
- 0.125
Intolerance Scores
- loftool
- 0.190
- rvis_EVS
- 0.85
- rvis_percentile_EVS
- 88.42
Haploinsufficiency Scores
- pHI
- 0.102
- hipred
- N
- hipred_score
- 0.264
- ghis
- 0.405
Essentials
- essential_gene_CRISPR
- N
- essential_gene_CRISPR2
- N
- essential_gene_gene_trap
- N
- gene_indispensability_pred
- E
- gene_indispensability_score
- 0.759
Gene Damage Prediction
All | Recessive | Dominant | |
---|---|---|---|
Mendelian | Medium | Medium | Medium |
Primary Immunodeficiency | Medium | Medium | High |
Cancer | Medium | Medium | Medium |
Mouse Genome Informatics
- Gene name
- Krt33a
- Phenotype
- integument phenotype (the observable morphological and physiological characteristics of the skin and its associated structures, such as the hair, nails, sweat glands, sebaceous glands and other secretory glands that are manifested through development and lifespan);
Gene ontology
- Biological process
- keratinization;cornification
- Cellular component
- extracellular space;cytosol;intermediate filament
- Molecular function
- structural molecule activity