KRT33A

keratin 33A, the group of Keratins, type I

Basic information

Region (hg38): 17:41346092-41350828

Previous symbols: [ "KRTHA3A" ]

Links

ENSG00000006059NCBI:3883OMIM:602761HGNC:6450Uniprot:O76009AlphaFoldGenCCjaxSfariGnomADPubmedClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the KRT33A gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the KRT33A gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type Pathogenic Likely pathogenic VUS Likely benign Benign Sum
synonymous
0
missense
42
clinvar
42
nonsense
0
start loss
0
frameshift
0
inframe indel
0
splice donor/acceptor (+/-2bp)
0
splice region
0
non coding
0
Total 0 0 42 0 0

Variants in KRT33A

This is a list of pathogenic ClinVar variants found in the KRT33A region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position Type Phenotype Significance ClinVar
17-41346151-G-A not specified Uncertain significance (Mar 31, 2022)2281129
17-41346156-C-T not specified Uncertain significance (Sep 27, 2022)2368885
17-41346180-C-T not specified Uncertain significance (Jun 11, 2024)3289424
17-41346208-T-C not specified Uncertain significance (May 27, 2022)2402995
17-41346225-T-C not specified Uncertain significance (Apr 07, 2023)2535395
17-41346455-C-T not specified Uncertain significance (Apr 27, 2024)2264556
17-41346458-C-T not specified Uncertain significance (Apr 22, 2024)3289423
17-41346459-G-T not specified Uncertain significance (Aug 20, 2023)2595137
17-41346505-G-T not specified Uncertain significance (Feb 01, 2023)2473802
17-41346512-C-T not specified Uncertain significance (Feb 06, 2023)2457256
17-41346531-C-A not specified Uncertain significance (Dec 15, 2023)3116455
17-41346547-T-C not specified Uncertain significance (May 30, 2024)2291642
17-41346559-C-A not specified Uncertain significance (Jun 16, 2023)2589047
17-41346607-T-C not specified Uncertain significance (Feb 06, 2023)2456271
17-41346629-G-A not specified Uncertain significance (Aug 16, 2021)2387319
17-41346667-C-T not specified Uncertain significance (Aug 10, 2023)2588872
17-41346867-C-T not specified Uncertain significance (May 31, 2023)2522880
17-41346885-C-T not specified Uncertain significance (Aug 10, 2021)2242504
17-41346963-C-T not specified Uncertain significance (Feb 09, 2023)2482511
17-41347066-T-G not specified Uncertain significance (Jul 06, 2021)2398793
17-41347092-C-T not specified Uncertain significance (Dec 01, 2022)2359775
17-41347122-C-T not specified Uncertain significance (Apr 08, 2022)2379191
17-41347152-T-C not specified Uncertain significance (Sep 26, 2022)2361540
17-41347188-C-T not specified Uncertain significance (Apr 19, 2023)2513597
17-41347189-G-A not specified Uncertain significance (Oct 27, 2021)2367994

GnomAD

Source: gnomAD

GeneTypeBio TypeTranscript Coding Exons Length
KRT33Aprotein_codingprotein_codingENST00000007735 74721
pLI Probability
LOF Intolerant
pRec Probability
LOF Recessive
Individuals with
no LOFs
Individuals with
Homozygous LOFs
Individuals with
Heterozygous LOFs
Defined p
3.19e-170.0013312559611511257480.000605
Z-Score Observed Expected Observed/Expected Mutation Rate Total Possible in Transcript
Missense-1.022942491.180.00001672618
Missense in Polyphen8481.7081.028913
Synonymous-0.4111181121.050.00000741815
Loss of Function-0.8232319.11.209.06e-7211

LoF frequencies by population

EthnicitySum of pLOFs p
African & African-American0.001250.00125
Ashkenazi Jewish0.0001980.000198
East Asian0.0004890.000489
Finnish0.00009240.0000924
European (Non-Finnish)0.0005650.000563
Middle Eastern0.0004890.000489
South Asian0.001180.00114
Other0.0009880.000978

dbNSFP

Source: dbNSFP

Pathway
Estrogen signaling pathway - Homo sapiens (human);Keratinization;Developmental Biology (Consensus)

Recessive Scores

pRec
0.125

Intolerance Scores

loftool
0.190
rvis_EVS
0.85
rvis_percentile_EVS
88.42

Haploinsufficiency Scores

pHI
0.102
hipred
N
hipred_score
0.264
ghis
0.405

Essentials

essential_gene_CRISPR
N
essential_gene_CRISPR2
N
essential_gene_gene_trap
N
gene_indispensability_pred
E
gene_indispensability_score
0.759

Gene Damage Prediction

AllRecessiveDominant
MendelianMediumMediumMedium
Primary ImmunodeficiencyMediumMediumHigh
CancerMediumMediumMedium

Mouse Genome Informatics

Gene name
Krt33a
Phenotype
integument phenotype (the observable morphological and physiological characteristics of the skin and its associated structures, such as the hair, nails, sweat glands, sebaceous glands and other secretory glands that are manifested through development and lifespan);

Gene ontology

Biological process
keratinization;cornification
Cellular component
extracellular space;cytosol;intermediate filament
Molecular function
structural molecule activity