LCIIAR

lung cancer immune cell infiltration associated lncRNA, the group of Long non-coding RNAs with non-systematic symbols

Basic information

Region (hg38): 15:29664498-29705804

Links

ENSG00000256802 ∙ NCBI:100130111 ∙ ∙ HGNC:56346 ∙ ∙ ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the LCIIAR gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the LCIIAR gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense						0
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	0	0	0

Variants in LCIIAR

This is a list of pathogenic ClinVar variants found in the LCIIAR region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
15-29701636-C-A		not specified	Uncertain significance (Aug 02, 2022)
15-29701648-G-A		not specified	Uncertain significance (Mar 18, 2024)
15-29701654-C-T		not specified	Uncertain significance (Jan 23, 2024)
15-29701664-C-A		not specified	Uncertain significance (Dec 08, 2021)
15-29701684-G-A		not specified	Uncertain significance (Apr 13, 2023)
15-29704217-C-T		TJP1-related disorder	Likely benign (Jul 28, 2020)
15-29704268-G-A		TJP1-related disorder	Likely benign (Feb 20, 2019)
15-29704280-C-T		TJP1-related disorder	Likely benign (Mar 23, 2020)
15-29705554-A-G		not specified	Uncertain significance (Aug 02, 2023)
15-29705580-A-G		TJP1-related disorder	Likely benign (May 27, 2019)
15-29705668-T-C		not specified	Uncertain significance (Aug 19, 2023)

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP