LENG9

protein-coding

leukocyte receptor cluster member 9

Gene summary

Predicted to enable zinc ion binding activity. [provided by Alliance of Genome Resources, Jul 2025]

MANE transcript

NM_001301782.2

Inheritance

—

ClinVar variants

U:85B:8

Top phenotype

Myoepithelial tumor

Max pathogenic AF

—

Genomic locus

chr19:54,461,732-54,463,778

External References & Databases

Transcript & Mutation Effects

hg38 • Region Span ~2.0 kb
Loading mutation effect viewer...

GenCC Phenotypes & Disease Associations

Curated gene-disease validity assertions and inheritance patterns

No GenCC data available for this gene.

ClinVar Associated Diseases & Phenotypes

Reported disease conditions connected to LENG9 variants in ClinVar

3 Conditions Cataloged
not specifiedTotal: 89
not providedTotal: 3
Myoepithelial tumorTotal: 1

ClinVar Variants & Pathogenicity by Type

Statistics based on transcript NM_001301782.2. Only rare variants are included.

We include only reliable ClinVar variants with their consequences to MANE Select, MANE Plus Clinical transcripts, or transcripts with TSL equal to 1. Click a count to filter the variants table below.

Slight differences between displayed counts and ClinVar may occur due to a different transcript/consequence chosen by our variant effect predictor, or because we classify Benign/Likely benign as Likely benign and Pathogenic/Likely pathogenic as Likely pathogenic.

EffectPLPVUSLBBSum
synonymous
2
clinvar
2
missense
83
clinvar
6
clinvar
89
nonsense
0
start loss
1
clinvar
1
frameshift
1
clinvar
1
splice donor/acceptor (+/-2bp)
0
Total00858093
Loading ClinVar variants...

Transcript Catalog

Annotated transcript isoforms across RefSeq and Ensembl databases

Showing 2 of 2 transcripts
Transcript IDSourceProtein IDCoding ExonsMANE Status
NM_001301782.2RefSeqNP_001288711.11MANE Select
ENST00000611161.2EnsemblENSP00000479355.11MANE Select

Gene Ontology (GO) Annotations & Pathways

Biological processes, molecular functions, cellular components and pathways

Molecular Function

  • metal ion binding

dbNSFP Gene Annotations

Source: dbNSFP

Essentials

Essential (CRISPR)
N
Essential (CRISPR2)
N
Essential (gene trap)
E
Indispensability pred.
N
Indispensability score
0.165

Gene Damage Prediction

AllRecessiveDominant
MendelianHighMediumHigh
Primary ImmunodeficiencyHighHighHigh
CancerHighHighHigh
For research and educational, non-commercial use only. Not for clinical or diagnostic use. GeneBe does not provide medical advice. Data use for AI modeling is prohibited: if used, the cost is $0.001 per byte of downloaded uncompressed data.