LIN37

lin-37 DREAM MuvB core complex component

Basic information

Region (hg38): 19:35748361-35754519

Links

ENSG00000267796 ∙ NCBI:55957 ∙ ∙ HGNC:33234 ∙ Uniprot:Q96GY3 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the LIN37 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the LIN37 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous				1		1
missense			24			24
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	24	1	0

Variants in LIN37

This is a list of pathogenic ClinVar variants found in the LIN37 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
19-35748753-A-T		not specified	Uncertain significance (Jan 02, 2024)
19-35752222-G-C		not specified	Uncertain significance (Dec 13, 2022)
19-35752242-A-C		not specified	Uncertain significance (Feb 16, 2023)
19-35752480-A-G		not specified	Uncertain significance (May 28, 2024)
19-35752817-G-A		not specified	Uncertain significance (Jul 26, 2022)
19-35752925-G-A		not specified	Uncertain significance (Dec 28, 2022)
19-35752988-C-T		not specified	Uncertain significance (Feb 06, 2024)
19-35753119-G-A		not specified	Uncertain significance (Apr 20, 2023)
19-35753148-G-A			Likely benign (Apr 01, 2023)
19-35753149-C-T		not specified	Uncertain significance (Feb 06, 2023)
19-35753178-G-A		not specified	Uncertain significance (Jan 04, 2024)
19-35753203-C-A		not specified	Uncertain significance (Mar 29, 2022)
19-35753203-C-T		not specified	Uncertain significance (Feb 11, 2022)
19-35753204-G-C		not specified	Uncertain significance (Mar 29, 2022)
19-35754044-C-T		not specified	Uncertain significance (May 15, 2023)
19-35754050-G-A		not specified	Uncertain significance (Oct 03, 2022)
19-35754080-G-A		not specified	Uncertain significance (Sep 14, 2022)
19-35754146-C-G		not specified	Uncertain significance (Oct 04, 2022)
19-35754264-T-G		not specified	Uncertain significance (Apr 24, 2024)
19-35754312-C-T		not specified	Uncertain significance (Dec 11, 2023)
19-35754313-G-A		not specified	Uncertain significance (Dec 16, 2022)
19-35754413-G-A		not specified	Uncertain significance (Jun 29, 2022)
19-35754431-C-T		not specified	Uncertain significance (Jan 10, 2022)
19-35754437-G-C		not specified	Uncertain significance (Aug 17, 2022)
19-35754464-A-C		not specified	Uncertain significance (Jan 23, 2023)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
LIN37	protein_coding	protein_coding	ENST00000301159	9	6159

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.00652	0.976	124639	0	33	124672	0.000132

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	0.985	122	157	0.779	0.0000106	1572
Missense in Polyphen		50	57.547	0.86885		551
Synonymous	0.627	52	58.1	0.895	0.00000366	468
Loss of Function	2.09	6	14.6	0.411	7.00e-7	172

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.000296	0.000296
Ashkenazi Jewish	0.00	0.00
East Asian	0.000612	0.000612
Finnish	0.00	0.00
European (Non-Finnish)	0.0000987	0.0000885
Middle Eastern	0.000612	0.000612
South Asian	0.0000654	0.0000654
Other	0.000165	0.000165

dbNSFP

Source: dbNSFP

• Pathway: Cellular senescence - Homo sapiens (human);Polo-like kinase mediated events;Transcription of E2F targets under negative control by DREAM complex;G0 and Early G1;Mitotic G1-G1/S phases;G2/M Transition;Mitotic G2-G2/M phases;Cell Cycle;Cell Cycle, Mitotic (Consensus)

Recessive Scores

• pRec: 0.127

Haploinsufficiency Scores

• pHI: 0.101
• hipred: Y
• hipred_score: 0.774
• ghis: 0.472

Essentials

• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: E
• gene_indispensability_score: 0.972

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Lin37

Gene ontology

• Biological process: regulation of cell cycle
• Cellular component: nucleoplasm;transcriptional repressor complex
• Molecular function: protein binding