LINC00184

long intergenic non-protein coding RNA 184, the group of Long intergenic non-protein coding RNAs

Basic information

Region (hg38): 1:234609295-234637418

Previous symbols: [ "NCRNA00184" ]

Links

ENSG00000224939 ∙ NCBI:100302691 ∙ ∙ HGNC:37192 ∙ ∙ ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the LINC00184 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the LINC00184 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense						0
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	0	0	0

Variants in LINC00184

This is a list of pathogenic ClinVar variants found in the LINC00184 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
1-234609296-G-A			Uncertain significance (Nov 27, 2023)
1-234609306-G-T		Immunodeficiency, common variable, 14	Uncertain significance (Aug 07, 2023)
1-234609309-C-A			Likely benign (May 19, 2023)
1-234609314-G-A			Uncertain significance (Mar 27, 2022)
1-234609315-C-T			Likely benign (May 02, 2023)
1-234609323-G-A			Uncertain significance (Aug 16, 2023)
1-234609327-C-T			Likely benign (Dec 13, 2023)
1-234609329-C-T			Uncertain significance (Jun 20, 2023)
1-234609333-C-T			Likely benign (May 17, 2022)
1-234609336-G-T			Likely benign (Nov 14, 2022)
1-234609339-G-A			Likely benign (Nov 15, 2023)
1-234609342-G-A			Likely benign (Apr 14, 2022)
1-234609347-CGACGCGGTCGGCGCCCTCGTAGTT-C		Immunodeficiency, common variable, 14	Likely pathogenic (Jul 05, 2022)
1-234609348-G-T			Likely benign (Nov 27, 2023)
1-234609354-G-C			Uncertain significance (May 10, 2022)
1-234609357-G-C			Likely benign (Jul 12, 2022)
1-234609365-C-T			Uncertain significance (Nov 13, 2023)
1-234609366-G-A			Likely benign (Oct 15, 2023)
1-234609369-G-A			Likely benign (Jan 06, 2024)
1-234609372-G-A			Likely benign (Aug 15, 2022)
1-234609375-G-A			Likely benign (Jun 13, 2022)
1-234609378-G-A			Likely benign (Jan 28, 2024)
1-234609379-C-A			Uncertain significance (Jul 14, 2021)
1-234609381-G-A			Likely benign (Feb 19, 2023)
1-234609383-G-A			Uncertain significance (Jul 01, 2022)

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP