LINC00200

long intergenic non-protein coding RNA 200, the group of Long intergenic non-protein coding RNAs

Basic information

Region (hg38): 10:1159768-1289426

Previous symbols: [ "C10orf139", "NCRNA00200" ]

Links

ENSG00000229205 ∙ NCBI:399706 ∙ ∙ HGNC:30974 ∙ ∙ ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the LINC00200 gene.

• Inborn genetic diseases (22 variants)
• not provided (4 variants)

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the LINC00200 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense						0
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding			22	1	3	26
Total	0	0	22	1	3

Variants in LINC00200

This is a list of pathogenic ClinVar variants found in the LINC00200 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
10-1183212-T-A		not specified	Uncertain significance (Oct 20, 2023)
10-1183225-G-A		not specified	Uncertain significance (Feb 28, 2023)
10-1183309-C-G		not specified	Uncertain significance (Dec 19, 2022)
10-1183324-A-G		not specified	Uncertain significance (Jun 26, 2024)
10-1183345-C-T		not specified	Uncertain significance (Jun 29, 2022)
10-1183359-C-T		not specified	Uncertain significance (Aug 10, 2024)
10-1184874-C-T		not specified	Uncertain significance (Feb 13, 2024)
10-1184875-G-A		not specified	Uncertain significance (Sep 29, 2023)
10-1184883-C-T		not specified	Uncertain significance (Jul 20, 2021)
10-1184896-C-T		not specified	Uncertain significance (Nov 20, 2024)
10-1184902-T-G		not specified	Uncertain significance (Oct 29, 2021)
10-1184934-C-T			Benign (Jun 27, 2018)
10-1184948-G-C		not specified	Uncertain significance (Oct 04, 2024)
10-1184967-G-A		not specified	Likely benign (Oct 01, 2024)
10-1184968-C-T		not specified	Uncertain significance (Sep 18, 2024)
10-1184973-C-T		not specified	Uncertain significance (Mar 31, 2024)
10-1184977-C-T		not specified	Uncertain significance (Jul 14, 2024)
10-1185003-G-A		not specified	Uncertain significance (Jan 24, 2024)
10-1185021-G-A		not specified	Uncertain significance (Dec 26, 2023)
10-1199981-G-A		not specified	Uncertain significance (Jun 07, 2024)
10-1199998-G-A		not specified	Uncertain significance (Mar 12, 2024)
10-1199999-C-G		not specified	Uncertain significance (Jul 19, 2023)
10-1217044-A-G		not specified	Uncertain significance (Jan 26, 2022)
10-1217061-C-A		not specified	Uncertain significance (Nov 10, 2024)
10-1217086-C-T		not specified	Uncertain significance (Oct 04, 2022)

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP