LINC00472

long intergenic non-protein coding RNA 472, the group of Long intergenic non-protein coding RNAs

Basic information

Region (hg38): 6:71187161-71420745

Previous symbols: [ "C6orf155" ]

Links

ENSG00000233237 ∙ NCBI:79940 ∙ OMIM:620059 ∙ HGNC:21380 ∙ Uniprot:Q9H8W2 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the LINC00472 gene.

• Inborn genetic diseases (13 variants)

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the LINC00472 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense						0
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding			13			13
Total	0	0	13	0	0

Variants in LINC00472

This is a list of pathogenic ClinVar variants found in the LINC00472 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
6-71289016-C-T		not specified	Uncertain significance (Apr 12, 2022)
6-71289018-G-A		not specified	Uncertain significance (Oct 29, 2021)
6-71289079-A-G		not specified	Uncertain significance (Nov 27, 2023)
6-71289093-C-A		not specified	Uncertain significance (Aug 31, 2023)
6-71289129-C-G		not specified	Uncertain significance (Nov 17, 2023)
6-71289140-C-G		not specified	Uncertain significance (Apr 20, 2024)
6-71293323-C-A		not specified	Uncertain significance (Jun 10, 2024)
6-71293327-A-C		not specified	Uncertain significance (Oct 17, 2023)
6-71301578-G-C		not specified	Uncertain significance (May 30, 2024)
6-71301585-C-T		not specified	Uncertain significance (Jun 02, 2024)
6-71301586-G-A		not specified	Uncertain significance (Feb 27, 2023)
6-71301639-C-G		not specified	Uncertain significance (Feb 22, 2023)
6-71301640-G-A		not specified	Uncertain significance (Feb 09, 2023)
6-71301685-C-T		not specified	Uncertain significance (Dec 19, 2022)
6-71301690-G-A		not specified	Likely benign (Sep 22, 2023)
6-71301715-C-A		not specified	Uncertain significance (May 07, 2024)
6-71301719-G-A		not specified	Uncertain significance (Apr 20, 2024)
6-71301721-A-G		not specified	Uncertain significance (Jun 18, 2021)
6-71301789-A-C		not specified	Uncertain significance (Nov 17, 2022)
6-71301906-T-G		not specified	Uncertain significance (Sep 22, 2022)
6-71301943-A-C		not specified	Uncertain significance (Feb 05, 2024)
6-71301972-G-A		not specified	Uncertain significance (Sep 14, 2023)
6-71301998-C-A		not specified	Uncertain significance (Mar 17, 2023)
6-71302003-A-C		not specified	Uncertain significance (Aug 10, 2023)

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP