LINC00534

long intergenic non-protein coding RNA 534, the group of Long intergenic non-protein coding RNAs

Basic information

Region (hg38): 8:90221341-90687863

Links

ENSG00000253394 ∙ ∙ ∙ HGNC:43643 ∙ ∙ ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the LINC00534 gene.

• Inborn genetic diseases (14 variants)

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the LINC00534 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense						0
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding			14			14
Total	0	0	14	0	0

Variants in LINC00534

This is a list of pathogenic ClinVar variants found in the LINC00534 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
8-90625696-G-A		not specified	Uncertain significance (Nov 17, 2022)
8-90625856-T-C		not specified	Uncertain significance (Sep 14, 2022)
8-90631565-A-C		not specified	Uncertain significance (May 30, 2024)
8-90631617-G-T		not specified	Uncertain significance (Jan 02, 2024)
8-90631619-G-A		not specified	Uncertain significance (Jan 26, 2022)
8-90631634-G-C		not specified	Uncertain significance (Jul 30, 2023)
8-90631689-G-A		not specified	Uncertain significance (Aug 17, 2022)
8-90645158-C-T		not specified	Uncertain significance (Apr 09, 2024)
8-90645191-C-T		not specified	Uncertain significance (Jan 09, 2024)
8-90645281-C-A		not specified	Uncertain significance (Apr 27, 2024)
8-90645304-C-T		not specified	Uncertain significance (Apr 19, 2023)
8-90645310-A-G		not specified	Uncertain significance (Jan 03, 2024)
8-90645313-A-G		not specified	Uncertain significance (Aug 12, 2021)
8-90645566-G-A		not specified	Uncertain significance (Jan 22, 2024)
8-90645686-C-G		not specified	Uncertain significance (Jun 17, 2024)
8-90645694-T-C		not specified	Uncertain significance (Apr 26, 2024)
8-90645701-A-G		not specified	Uncertain significance (Apr 18, 2023)
8-90645754-C-A		not specified	Uncertain significance (Oct 02, 2023)
8-90645755-C-A		not specified	Uncertain significance (Oct 02, 2023)
8-90645755-C-T		not specified	Uncertain significance (Dec 06, 2022)
8-90645764-G-A		not specified	Uncertain significance (Jan 03, 2024)
8-90645776-C-G		not specified	Uncertain significance (Mar 01, 2023)
8-90645778-G-T		not specified	Uncertain significance (May 30, 2023)
8-90645820-G-A		not specified	Uncertain significance (Mar 23, 2023)
8-90645830-C-T		not specified	Uncertain significance (May 14, 2024)

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP