LINC00608

long intergenic non-protein coding RNA 608, the group of Long intergenic non-protein coding RNAs

Basic information

Region (hg38): 2:218974299-218989940

Links

ENSG00000236445 ∙ NCBI:151300 ∙ ∙ HGNC:27179 ∙ ∙ ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the LINC00608 gene.

• Inborn genetic diseases (11 variants)
• not provided (2 variants)

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the LINC00608 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense						0
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding			11		2	13
Total	0	0	11	0	2

Variants in LINC00608

This is a list of pathogenic ClinVar variants found in the LINC00608 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
2-218981681-C-T		not specified	Uncertain significance (Oct 06, 2024)
2-218981687-A-C		not specified	Uncertain significance (Feb 28, 2023)
2-218981747-G-C		not specified	Uncertain significance (Mar 11, 2024)
2-218981768-C-G		not specified	Uncertain significance (Apr 01, 2024)
2-218981774-C-G		not specified	Uncertain significance (Aug 02, 2021)
2-218981797-G-A		not specified	Uncertain significance (Jul 15, 2021)
2-218981842-A-G		not specified	Uncertain significance (Jun 07, 2024)
2-218981866-G-A		not specified	Uncertain significance (Mar 04, 2024)
2-218981890-G-T		not specified	Uncertain significance (May 14, 2024)
2-218981891-C-T		not specified	Uncertain significance (May 14, 2024)
2-218981905-A-G		not specified	Uncertain significance (Mar 13, 2023)
2-218981908-G-A		not specified	Uncertain significance (Feb 27, 2024)
2-218981957-G-A		not specified	Uncertain significance (Dec 10, 2024)
2-218981970-C-A			Benign (Jun 29, 2018)
2-218981971-G-T		not specified	Uncertain significance (Jul 19, 2022)
2-218982031-T-G		not specified	Uncertain significance (Oct 20, 2024)
2-218982039-G-C		not specified	Uncertain significance (Apr 17, 2024)
2-218982049-T-C		not specified	Uncertain significance (Aug 30, 2022)
2-218982127-C-T		not specified	Uncertain significance (Nov 11, 2024)
2-218982130-C-T		not specified	Uncertain significance (Dec 03, 2021)
2-218982446-C-CT			Benign (Apr 19, 2019)
2-218984237-G-T		not specified	Uncertain significance (Dec 03, 2021)
2-218984261-A-G		not specified	Uncertain significance (Mar 29, 2023)
2-218984266-G-C		not specified	Uncertain significance (Jul 12, 2022)
2-218984268-G-T		not specified	Uncertain significance (Mar 19, 2024)

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP