LINC00624

long intergenic non-protein coding RNA 624, the group of Long intergenic non-protein coding RNAs

Basic information

Region (hg38): 1:147258885-147517879

Links

ENSG00000278811 ∙ NCBI:100289211 ∙ ∙ HGNC:44254 ∙ ∙ ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the LINC00624 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the LINC00624 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense						0
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding			78	7	60	145
Total	0	0	78	7	60

Variants in LINC00624

This is a list of pathogenic ClinVar variants found in the LINC00624 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
1-147259832-C-CA		CHD1L-related disorder	Benign (Dec 31, 2019)
1-147259840-C-G		not specified	Uncertain significance (Dec 10, 2024)
1-147260159-C-T			Benign (Jun 21, 2021)
1-147260168-T-T			Benign (Nov 10, 2018)
1-147264152-T-C			Benign (Jun 19, 2021)
1-147264432-T-C		not specified	Uncertain significance (Jun 16, 2023)
1-147264433-C-T			Benign (Nov 12, 2018)
1-147264450-C-T		not specified	Uncertain significance (Dec 05, 2022)
1-147264451-C-T			Benign (Dec 31, 2019)
1-147264452-G-A			Uncertain significance (Mar 01, 2025)
1-147264453-G-C		not specified	Uncertain significance (Nov 03, 2023)
1-147264469-C-G		not specified	Uncertain significance (Dec 03, 2021)
1-147264486-A-G		not specified	Uncertain significance (Mar 19, 2024)
1-147264491-C-T		not specified	Uncertain significance (Jan 01, 2025)
1-147264510-C-T		not specified	Uncertain significance (Jan 03, 2024)
1-147264517-C-G			Benign (Nov 10, 2018)
1-147264517-C-CT			Uncertain significance (Jul 19, 2023)
1-147264552-G-A		Congenital anomaly of kidney and urinary tract	Uncertain significance (Oct 01, 2018)
1-147264564-T-C		not specified	Uncertain significance (Dec 03, 2021)
1-147264889-G-T			Benign (Nov 12, 2018)
1-147265684-A-C			Benign (Nov 12, 2018)
1-147265698-G-T			Benign (Jun 19, 2021)
1-147265831-G-C			Benign (Nov 10, 2018)
1-147265954-G-T			Uncertain significance (Mar 02, 2021)
1-147265982-G-C		not specified	Uncertain significance (Dec 03, 2024)

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP