LINC00630

long intergenic non-protein coding RNA 630, the group of Long intergenic non-protein coding RNAs

Basic information

Region (hg38): X:102720701-102997186

Links

ENSG00000223546 ∙ NCBI:100287765 ∙ ∙ HGNC:44263 ∙ ∙ ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the LINC00630 gene.

• not specified (1 variants)

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the LINC00630 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense						0
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding					1	1
Total	0	0	0	0	1

Variants in LINC00630

This is a list of pathogenic ClinVar variants found in the LINC00630 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
X-102749047-G-T		not specified	Uncertain significance (Apr 30, 2025)
X-102749078-G-C		not specified	Uncertain significance (Apr 11, 2025)
X-102749093-T-G		not specified	Likely benign (May 17, 2023)
X-102749113-A-C		not specified	Uncertain significance (Oct 02, 2023)
X-102749118-G-A			Benign (Feb 25, 2018)
X-102749146-A-G		not specified	Uncertain significance (Nov 22, 2024)
X-102749170-A-G		not specified	Uncertain significance (Jan 03, 2024)
X-102749204-C-T		not specified	Likely benign (Apr 03, 2025)
X-102749228-C-T		not specified	Uncertain significance (May 01, 2025)
X-102749263-C-T		not specified	Likely benign (Apr 11, 2025)
X-102749288-G-A		not specified	Uncertain significance (Feb 14, 2025)
X-102749289-C-T			Likely benign (Jul 01, 2022)
X-102749314-A-G		not specified	Uncertain significance (Apr 10, 2025)
X-102749321-C-T		not specified	Uncertain significance (Mar 12, 2024)
X-102749351-T-C		not specified	Uncertain significance (May 19, 2025)
X-102749395-A-G		not specified	Uncertain significance (Dec 16, 2024)
X-102749506-G-A		not specified	Uncertain significance (Apr 25, 2025)
X-102749560-A-C		not specified	Conflicting classifications of pathogenicity (May 17, 2025)
X-102749562-T-A		not specified	Uncertain significance (Oct 06, 2021)
X-102749629-A-G		not specified	Uncertain significance (Jun 12, 2025)
X-102749734-A-G		not specified	Uncertain significance (Feb 23, 2023)
X-102749761-G-A		not specified	Likely benign (Jan 04, 2024)
X-102749791-C-T		not specified	Uncertain significance (Dec 11, 2024)
X-102749792-G-A		not specified	Uncertain significance (Apr 20, 2025)
X-102749809-C-G		not specified	Uncertain significance (May 04, 2023)

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP