LINC00987

long intergenic non-protein coding RNA 987, the group of Long intergenic non-protein coding RNAs

Basic information

Region (hg38): 12:9144848-9261503

Links

ENSG00000237248 ∙ NCBI:100499405 ∙ ∙ HGNC:48911 ∙ ∙ ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the LINC00987 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the LINC00987 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense						0
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	0	0	0

Variants in LINC00987

This is a list of pathogenic ClinVar variants found in the LINC00987 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
12-9149576-C-T		not specified	Uncertain significance (Dec 31, 2024)
12-9150686-A-G			Likely benign (Jun 28, 2018)
12-9150727-C-T		not specified	Uncertain significance (Jun 22, 2023)
12-9151612-C-T		not specified	Uncertain significance (Oct 06, 2024)
12-9151636-T-A		not specified	Uncertain significance (Jul 12, 2023)
12-9151648-G-A		not specified	Uncertain significance (Oct 01, 2024)
12-9152254-G-T		not specified	Uncertain significance (May 06, 2024)
12-9152262-C-A		not specified	Uncertain significance (Dec 13, 2023)
12-9152848-C-T		not specified	Uncertain significance (Mar 07, 2024)
12-9152871-G-C		not specified	Uncertain significance (Aug 27, 2024)
12-9152889-C-A		not specified	Uncertain significance (Dec 30, 2024)
12-9153162-A-T		not specified	Uncertain significance (Jul 30, 2024)
12-9153203-T-G		not specified	Uncertain significance (Sep 06, 2022)
12-9153237-G-A		not specified	Uncertain significance (Jan 12, 2024)
12-9153262-C-T		not specified	Likely benign (Dec 31, 2024)
12-9154642-C-T		not specified	Uncertain significance (Feb 20, 2025)
12-9154656-A-G		not specified	Likely benign (Feb 09, 2023)
12-9154693-C-G		not specified	Uncertain significance (Feb 19, 2025)
12-9154704-G-A		not specified	Uncertain significance (Oct 25, 2024)
12-9154744-A-T		not specified	Uncertain significance (Jul 11, 2023)
12-9154791-C-G		not specified	Uncertain significance (Mar 01, 2023)
12-9154818-C-T		not specified	Uncertain significance (Jul 30, 2024)
12-9154831-C-T		not specified	Likely benign (Feb 14, 2024)
12-9157208-G-T		not specified	Uncertain significance (May 15, 2023)
12-9157249-G-A		not specified	Uncertain significance (Apr 01, 2024)

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP