LINC01013

long intergenic non-protein coding RNA 1013, the group of Long intergenic non-protein coding RNAs

Basic information

Region (hg38): 6:131901797-132169995

Previous symbols: [ "LINC02921" ]

Links

ENSG00000228495 ∙ NCBI:100507254 ∙ ∙ HGNC:48987 ∙ ∙ ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the LINC01013 gene.

• not provided (6 variants)
• Inborn genetic diseases (6 variants)

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the LINC01013 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense						0
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding			6	5	1	12
Total	0	0	6	5	1

Variants in LINC01013

This is a list of pathogenic ClinVar variants found in the LINC01013 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
6-131949316-T-C		not specified	Uncertain significance (Mar 22, 2023)
6-131949382-T-C		not specified	Uncertain significance (Jan 24, 2023)
6-131949399-G-A			Likely benign (Oct 24, 2017)
6-131949410-G-C		not specified	Uncertain significance (Feb 26, 2024)
6-131949430-G-A		not specified	Uncertain significance (Feb 13, 2023)
6-131949493-G-T		not specified	Uncertain significance (Feb 11, 2022)
6-131949549-C-A		not specified	Uncertain significance (Jun 10, 2022)
6-131950005-G-T		not specified	Uncertain significance (Mar 23, 2023)
6-131950012-T-A			Likely benign (Jul 03, 2018)
6-131950057-C-T			Likely benign (Jul 18, 2018)
6-131950080-C-T		not specified	Uncertain significance (Sep 14, 2022)
6-131950313-C-T		not specified	Uncertain significance (Mar 25, 2024)
6-131950319-G-C		not specified	Uncertain significance (Nov 10, 2022)
6-131950344-C-A		not specified	Uncertain significance (Nov 23, 2021)
6-131950418-T-C		not specified	Uncertain significance (Jan 19, 2024)
6-131950529-G-A			Likely benign (May 03, 2018)
6-131950549-G-A			Benign (Apr 01, 2024)
6-131950832-G-A		not specified	Uncertain significance (Aug 09, 2021)
6-131950847-C-T		not specified	Uncertain significance (Dec 05, 2022)
6-131950878-C-T		not specified	Uncertain significance (Jul 13, 2021)
6-131950903-G-C		not specified	Uncertain significance (Jun 18, 2021)
6-131950925-G-A		not specified	Uncertain significance (Sep 22, 2023)
6-131950935-G-C		not specified	Uncertain significance (Oct 25, 2023)
6-131950945-C-G		not specified	Uncertain significance (May 13, 2024)
6-131950947-C-G		not specified	Uncertain significance (Jan 24, 2023)

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP