LINC01053

long intergenic non-protein coding RNA 1053, the group of Long intergenic non-protein coding RNAs

Basic information

Region (hg38): 13:25168969-25193921

Links

ENSG00000238169 ∙ NCBI:102723318 ∙ ∙ HGNC:49047 ∙ ∙ ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the LINC01053 gene.

• Inborn genetic diseases (29 variants)

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the LINC01053 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense						0
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding			29			29
Total	0	0	29	0	0

Variants in LINC01053

This is a list of pathogenic ClinVar variants found in the LINC01053 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
13-25169687-G-C		not specified	Uncertain significance (May 16, 2022)
13-25169770-T-C		not specified	Uncertain significance (Aug 04, 2023)
13-25169848-G-A		not specified	Uncertain significance (Dec 18, 2023)
13-25169872-C-T		not specified	Uncertain significance (Mar 06, 2023)
13-25169873-G-A		not specified	Uncertain significance (Dec 21, 2022)
13-25169896-T-C		not specified	Uncertain significance (Aug 02, 2021)
13-25169917-G-A		not specified	Uncertain significance (Aug 12, 2021)
13-25169986-A-G		not specified	Uncertain significance (Sep 30, 2021)
13-25169992-G-A		not specified	Uncertain significance (Oct 04, 2022)
13-25170034-G-A		not specified	Uncertain significance (Aug 19, 2023)
13-25170137-G-A		not specified	Uncertain significance (Jul 21, 2021)
13-25170144-C-A		not specified	Uncertain significance (Jan 29, 2024)
13-25170167-C-T		not specified	Uncertain significance (Dec 17, 2021)
13-25170232-G-T		not specified	Uncertain significance (Jan 04, 2022)
13-25170276-C-A		not specified	Likely benign (May 06, 2024)
13-25170330-C-G		not specified	Uncertain significance (Jun 24, 2022)
13-25170335-C-T		not specified	Uncertain significance (Oct 10, 2023)
13-25170345-C-T		not specified	Uncertain significance (Feb 10, 2022)
13-25170446-C-A		not specified	Uncertain significance (Oct 26, 2022)
13-25170488-G-C		not specified	Uncertain significance (Jan 10, 2023)
13-25170488-G-T		not specified	Uncertain significance (Dec 21, 2022)
13-25170536-T-C		not specified	Uncertain significance (Nov 29, 2021)
13-25170587-C-T		not specified	Uncertain significance (Feb 28, 2023)
13-25170689-C-A		not specified	Uncertain significance (Jun 17, 2024)
13-25170691-G-A		not specified	Uncertain significance (Jul 11, 2023)

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP