LINC01138

long intergenic non-protein coding RNA 1138, the group of Long intergenic non-protein coding RNAs

Basic information

Region (hg38): 1:148254495-148529415

Previous symbols: [ "LINC00875" ]

Links

ENSG00000274020 ∙ NCBI:388685 ∙ ∙ HGNC:49454 ∙ ∙ ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the LINC01138 gene.

• Inborn genetic diseases (9 variants)
• not provided (3 variants)

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the LINC01138 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense						0
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding			9	3		12
Total	0	0	9	3	0

Variants in LINC01138

This is a list of pathogenic ClinVar variants found in the LINC01138 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
1-148263588-C-T		RNVU1-22-associated neurodevelopmental disorder	Uncertain significance (Oct 09, 2024)
1-148482984-C-T		not specified	Uncertain significance (Oct 05, 2023)
1-148482997-C-T		not specified	Uncertain significance (Jul 20, 2022)
1-148483024-A-G		not specified	Uncertain significance (Aug 09, 2021)
1-148483028-G-C		not specified	Uncertain significance (Dec 05, 2022)
1-148483034-G-G			Likely benign (May 01, 2022)
1-148483035-G-C		not specified	Uncertain significance (Aug 10, 2021)
1-148483059-C-G		not specified	Uncertain significance (Feb 27, 2024)
1-148483063-C-T		not specified	Uncertain significance (Jan 26, 2025)
1-148483068-C-T		not specified	Uncertain significance (Jan 27, 2025)
1-148483086-A-T		not specified	Uncertain significance (May 31, 2023)
1-148483087-T-G		not specified	Uncertain significance (Jun 10, 2024)
1-148483089-C-A		not specified	Uncertain significance (Aug 04, 2024)
1-148483096-A-G		not specified	Uncertain significance (Apr 26, 2023)
1-148483111-A-G		not specified	Uncertain significance (Mar 17, 2023)
1-148483113-C-A		not specified	Uncertain significance (May 23, 2024)
1-148483156-C-T		not specified	Uncertain significance (Jun 13, 2023)
1-148483174-C-T		not specified	Uncertain significance (Dec 02, 2022)
1-148483185-T-C		not specified	Uncertain significance (Mar 07, 2024)
1-148483197-C-T		not specified	Uncertain significance (Mar 14, 2023)
1-148483219-C-T			Likely benign (Apr 01, 2023)
1-148483240-C-T			Likely benign (Nov 01, 2022)
1-148522700-C-G		RNVU1-27-associated neurodevelopmental disorder	Uncertain significance (Oct 09, 2024)

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP