LINC01311

long intergenic non-protein coding RNA 1311, the group of Long intergenic non-protein coding RNAs

Basic information

Region (hg38): 22:19171395-19185045

Links

ENSG00000260924 ∙ NCBI:100652736 ∙ ∙ HGNC:50503 ∙ ∙ ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the LINC01311 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the LINC01311 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense						0
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	0	0	0

Variants in LINC01311

This is a list of pathogenic ClinVar variants found in the LINC01311 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
22-19175882-A-AGGCACAGGGTTCACAGTAAGCACATGGACAAGTG			Benign (Feb 28, 2022)
22-19176063-T-TCA			Likely benign (Jun 01, 2021)
22-19176064-C-CAT			Benign (Jun 29, 2018)
22-19176133-G-C			Uncertain significance (Feb 10, 2022)
22-19176136-C-T			Likely benign (Oct 17, 2022)
22-19176137-G-A			Uncertain significance (Aug 31, 2022)
22-19176138-T-C		2-hydroxyglutaric aciduria	Uncertain significance (Feb 17, 2020)
22-19176139-C-T			Benign (Sep 09, 2023)
22-19176154-G-GAGC			Uncertain significance (Sep 16, 2018)
22-19176172-A-G		SLC25A1-related disorder • not specified	Benign/Likely benign (Jul 01, 2024)
22-19176177-A-G		2-hydroxyglutaric aciduria	Uncertain significance (Sep 19, 2018)
22-19176205-G-A			Likely benign (Dec 12, 2023)
22-19176221-C-T		D,L-2-hydroxyglutaric aciduria	Likely pathogenic (Dec 02, 2023)
22-19176222-G-A		2-hydroxyglutaric aciduria • D,L-2-hydroxyglutaric aciduria	Pathogenic/Likely pathogenic (Mar 21, 2023)
22-19176222-G-C		D,L-2-hydroxyglutaric aciduria	Likely pathogenic (Aug 18, 2022)
22-19176225-G-A			Uncertain significance (Aug 22, 2022)
22-19176228-C-T			Uncertain significance (Apr 23, 2021)
22-19176244-T-A			Uncertain significance (Sep 30, 2021)
22-19176257-A-G			Likely benign (Dec 06, 2022)
22-19176262-C-T		not specified	Likely benign (Oct 19, 2022)
22-19176263-G-A			Benign/Likely benign (Nov 15, 2023)
22-19176406-C-T			Likely benign (Nov 29, 2022)
22-19176411-C-G			Likely benign (Aug 23, 2022)
22-19176420-C-T		2-hydroxyglutaric aciduria	Pathogenic (Jul 23, 2019)
22-19176421-G-A		D,L-2-hydroxyglutaric aciduria	Likely pathogenic (Sep 03, 2019)

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP