LINC01322

long intergenic non-protein coding RNA 1322, the group of Long intergenic non-protein coding RNAs

Basic information

Links

ENSG00000244128

∙ NCBI:103695433 ∙ ∙ HGNC:50528 ∙ ∙ ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the LINC01322 gene.

Deficiency of butyrylcholinesterase (114 variants)
Inborn genetic diseases (25 variants)
not provided (22 variants)
not specified (12 variants)
BCHE-related condition (4 variants)
BCHE, fluoride 2 (1 variants)
Butyrylcholinesterase activity (1 variants)
BCHE, H variant (1 variants)
- (1 variants)
See cases (1 variants)
Suxamethonium response - slow metabolism (1 variants)
BCHE, flouride 1 (1 variants)
Pseudocholinesterase deficiency (1 variants)
Butyrylcholinesterase deficiency, fluoride-resistant, Japanese type (1 variants)
BCHE, J variant (1 variants)
Postanesthetic apnea (1 variants)

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the LINC01322 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense						0
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region ? Intron variants in splice region, excluding donor/acceptor (+/-2bp)						0
non coding ? UTR, intron and other, non coding variants	5 clinvar	48 clinvar	80 clinvar	15 clinvar	5 clinvar	153
Total	5	48	80	15	5

Highest pathogenic variant AF is 0.000335

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP