LINC01394

long intergenic non-protein coding RNA 1394, the group of Long intergenic non-protein coding RNAs

Basic information

Region (hg38): 6:1321696-1391080

Links

ENSG00000281809 ∙ NCBI:106144586 ∙ ∙ HGNC:50670 ∙ ∙ ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the LINC01394 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the LINC01394 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense						0
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	0	0	0

Variants in LINC01394

This is a list of pathogenic ClinVar variants found in the LINC01394 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
6-1389957-G-A		not specified	Uncertain significance (Sep 21, 2023)
6-1389960-G-A		not specified	Uncertain significance (Feb 13, 2024)
6-1389991-C-T		not specified	Uncertain significance (Aug 11, 2022)
6-1389999-C-A		not specified	Uncertain significance (Apr 26, 2023)
6-1390005-C-T		not specified	Uncertain significance (Mar 11, 2022)
6-1390024-C-T		not specified	Uncertain significance (Dec 14, 2023)
6-1390041-CCCG-C		FOXF2-related disorder	Benign (Aug 01, 2019)
6-1390041-CCCGCCGCCG-C		FOXF2-related disorder	Likely benign (Feb 09, 2024)
6-1390041-CCCGCCGCCGCCG-C		FOXF2-related disorder	Likely benign (Sep 01, 2022)
6-1390041-C-CCCG		FOXF2-related disorder	Benign (Sep 20, 2019)
6-1390068-G-T		FOXF2-related disorder	Likely benign (Feb 15, 2023)
6-1390073-G-A		FOXF2-related disorder	Likely benign (Sep 25, 2023)
6-1390074-G-C		not specified	Uncertain significance (Aug 14, 2023)
6-1390143-G-A		not specified • FOXF2-related disorder	Uncertain significance (May 12, 2024)
6-1390146-A-T		not specified	Uncertain significance (Aug 12, 2021)
6-1390150-C-T		FOXF2-related disorder	Likely benign (Aug 01, 2019)
6-1390178-C-T		FOXF2-related disorder	Likely benign (Apr 10, 2019)
6-1390187-C-T		FOXF2-related disorder	Likely benign (Jan 04, 2024)
6-1390207-G-A		not specified	Uncertain significance (Aug 12, 2021)
6-1390207-G-T		not specified	Uncertain significance (Mar 15, 2024)
6-1390299-A-T		not specified	Uncertain significance (Mar 30, 2024)
6-1390300-G-C		not specified	Uncertain significance (Mar 30, 2024)
6-1390322-G-A		FOXF2-related disorder	Likely benign (Sep 01, 2020)
6-1390365-G-T		not specified	Uncertain significance (Mar 30, 2024)
6-1390394-C-T		FOXF2-related disorder	Likely benign (May 22, 2020)

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP