LINC01564

long intergenic non-protein coding RNA 1564, the group of Long intergenic non-protein coding RNAs

Basic information

Region (hg38): 6:53614863-53707024

Links

ENSG00000235899 ∙ NCBI:101927171 ∙ ∙ HGNC:51361 ∙ ∙ ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the LINC01564 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the LINC01564 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense						0
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding			45	1		46
Total	0	0	45	1	0

Variants in LINC01564

This is a list of pathogenic ClinVar variants found in the LINC01564 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
6-53651681-A-G		not specified	Uncertain significance (Nov 22, 2022)
6-53651708-C-T		not specified	Uncertain significance (Nov 14, 2023)
6-53651794-A-G		not specified	Uncertain significance (Apr 24, 2024)
6-53651807-G-A		not specified	Uncertain significance (Oct 10, 2023)
6-53651866-C-T		not specified	Uncertain significance (Nov 20, 2024)
6-53651878-G-T		not specified	Uncertain significance (Jul 06, 2021)
6-53651920-T-C		not specified	Uncertain significance (Sep 29, 2023)
6-53651987-G-T		not specified	Uncertain significance (Sep 10, 2024)
6-53652043-T-A		not specified	Uncertain significance (Jan 16, 2024)
6-53652071-C-A		not specified	Uncertain significance (Feb 19, 2025)
6-53652083-A-G		not specified	Uncertain significance (Oct 12, 2021)
6-53652085-C-G		not specified	Uncertain significance (Nov 28, 2024)
6-53652118-G-A		not specified	Uncertain significance (Apr 23, 2024)
6-53652181-G-C		not specified	Uncertain significance (Mar 16, 2022)
6-53652221-T-C		not specified	Uncertain significance (Dec 03, 2024)
6-53652242-C-G		not specified	Likely benign (Dec 31, 2024)
6-53652258-G-T		not specified	Uncertain significance (Aug 28, 2023)
6-53652279-C-G		not specified	Uncertain significance (Jul 31, 2024)
6-53652330-T-C		not specified	Likely benign (Jan 07, 2025)
6-53654162-C-T		not specified	Uncertain significance (Apr 28, 2023)
6-53654236-C-T		not specified	Uncertain significance (Jan 17, 2025)
6-53654303-G-A		not specified	Uncertain significance (Aug 09, 2021)
6-53654306-C-T		not specified	Uncertain significance (Nov 13, 2024)
6-53654318-C-T		not specified	Uncertain significance (Jun 10, 2024)
6-53654329-C-G		not specified	Uncertain significance (Aug 16, 2021)

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP