LINC01607

long intergenic non-protein coding RNA 1607, the group of Long intergenic non-protein coding RNAs

Basic information

Region (hg38): 8:79743143-79803431

Links

ENSG00000272138 ∙ NCBI:101927067 ∙ ∙ HGNC:51660 ∙ ∙ ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the LINC01607 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the LINC01607 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense						0
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	0	0	0

Variants in LINC01607

This is a list of pathogenic ClinVar variants found in the LINC01607 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
8-79765029-T-A			Benign (Nov 12, 2018)
8-79765215-A-G		HEY1-related disorder	Likely benign (Apr 29, 2020)
8-79765249-G-A		HEY1-related disorder	Likely benign (Mar 01, 2019)
8-79765292-A-G		HEY1-related disorder	Benign (Apr 08, 2019)
8-79765337-A-G		not specified	Uncertain significance (Apr 20, 2024)
8-79765348-G-A		not specified	Uncertain significance (Apr 17, 2024)
8-79765367-A-T		not specified	Uncertain significance (Mar 02, 2023)
8-79765387-G-A		not specified	Uncertain significance (Oct 05, 2021)
8-79765388-G-A		not specified	Uncertain significance (Feb 28, 2024)
8-79765427-C-A		not specified	Uncertain significance (Jan 10, 2023)
8-79765472-T-C		not specified	Uncertain significance (Feb 13, 2023)
8-79765525-G-A		not specified	Uncertain significance (Mar 11, 2024)
8-79765544-G-A		not specified	Uncertain significance (Jul 26, 2021)
8-79765577-C-T		not specified	Uncertain significance (Dec 06, 2021)
8-79765681-A-G		not specified	Uncertain significance (Dec 15, 2022)
8-79765707-T-G		HEY1-related disorder	Likely benign (Oct 28, 2019)
8-79765719-C-T		HEY1-related disorder	Likely benign (Mar 21, 2019)
8-79765728-C-T		HEY1-related disorder	Likely benign (Nov 01, 2022)
8-79765754-C-A		not specified	Uncertain significance (Feb 22, 2023)
8-79765763-C-T		not specified	Uncertain significance (Sep 15, 2021)
8-79765887-G-A			Benign (Jun 19, 2021)
8-79766065-C-CA			Benign (Nov 12, 2018)
8-79766192-T-C			Benign (Nov 12, 2018)
8-79766258-AGGCATGT-A		HEY1-related disorder	Benign (Jun 19, 2021)
8-79766297-CA-C			Benign (Jun 19, 2021)

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP