LINC01917

long intergenic non-protein coding RNA 1917, the group of Long intergenic non-protein coding RNAs

Basic information

Region (hg38): 18:53480825-53581107

Links

ENSG00000260433 ∙ NCBI:101928167 ∙ ∙ HGNC:52736 ∙ ∙ ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the LINC01917 gene.

• not provided (14 variants)
• - (3 variants)
• Colorectal cancer (2 variants)
• Mirror movements 1 (2 variants)
• Inborn genetic diseases (2 variants)
• Carcinoma of colon (1 variants)

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the LINC01917 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense						0
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding	2	1	13	4		20
Total	2	1	13	4	0

Variants in LINC01917

This is a list of pathogenic ClinVar variants found in the LINC01917 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
18-53486801-C-T			Likely benign (Jun 01, 2023)
18-53486806-G-A			Likely benign (Feb 27, 2020)
18-53486808-G-A		-	no classification for the single variant (-)
18-53486838-C-T		Mirror movements 1	Likely pathogenic (Jun 20, 2023)
18-53486839-A-G			Uncertain significance (Aug 23, 2019)
18-53486871-G-A		Inborn genetic diseases	Uncertain significance (Nov 06, 2023)
18-53486884-C-G			Uncertain significance (Jun 01, 2022)
18-53486892-ACT-A		Mirror movements 1	Pathogenic (Jan 18, 2011)
18-53486932-G-A		Colorectal cancer	Uncertain significance (Aug 01, 2016)
18-53486940-G-A		not specified	Uncertain significance (Feb 12, 2024)
18-53499296-A-T			Uncertain significance (Jun 01, 2023)
18-53499330-C-T			Uncertain significance (Oct 08, 2020)
18-53499342-C-G		Inborn genetic diseases	Uncertain significance (Dec 01, 2022)
18-53499408-C-T		-	no classification for the single variant (-)
18-53499427-G-A		Colorectal cancer • Inborn genetic diseases	Likely benign (Mar 29, 2022)
18-53499445-T-TGCTAC		DCC-related disorder	Uncertain significance (May 31, 2024)
18-53499457-C-T			Uncertain significance (Aug 23, 2019)
18-53499475-C-T			Uncertain significance (-)
18-53499478-A-C			Uncertain significance (Jul 20, 2022)
18-53526629-C-A		Carcinoma of colon	Pathogenic (Feb 01, 1994)
18-53526691-C-T			Uncertain significance (Dec 07, 2022)
18-53526713-C-CTGAAG		DCC-related disorder	Uncertain significance (Feb 14, 2024)
18-53526715-G-A		-	no classification for the single variant (-)
18-53526715-G-C		Inborn genetic diseases	Uncertain significance (Dec 28, 2023)
18-53526734-A-G			Uncertain significance (Sep 19, 2019)

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP