LINC01978

long intergenic non-protein coding RNA 1978, the group of Long intergenic non-protein coding RNAs

Basic information

Region (hg38): 17:79919283-79949934

Links

ENSG00000262188 ∙ NCBI:101928738 ∙ ∙ HGNC:52806 ∙ ∙ ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the LINC01978 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the LINC01978 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense						0
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	0	0	0

Variants in LINC01978

This is a list of pathogenic ClinVar variants found in the LINC01978 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
17-79940873-C-T		not specified	Uncertain significance (Dec 19, 2022)
17-79940887-G-A		not specified	Uncertain significance (Mar 06, 2023)
17-79940936-T-C		not specified	Uncertain significance (Feb 06, 2023)
17-79940951-C-T		not specified	Uncertain significance (Feb 22, 2023)
17-79940972-C-T		not specified	Uncertain significance (Aug 15, 2023)
17-79940983-C-T		not specified	Uncertain significance (Jan 24, 2024)
17-79940998-G-T		not specified	Uncertain significance (Dec 01, 2022)
17-79941050-C-T		not specified	Uncertain significance (Jul 20, 2021)
17-79941066-G-C		not specified	Uncertain significance (Feb 27, 2023)
17-79941070-C-T		not specified	Uncertain significance (Jan 10, 2023)
17-79942064-C-T		not specified	Uncertain significance (May 26, 2022)
17-79942065-G-A		not specified	Uncertain significance (Dec 21, 2022)
17-79942077-C-G		not specified	Uncertain significance (Aug 12, 2022)
17-79942080-C-T		not specified	Uncertain significance (Aug 21, 2023)
17-79942104-C-T		not specified	Uncertain significance (Oct 10, 2023)
17-79942127-G-A		not specified	Uncertain significance (Nov 02, 2023)
17-79942142-T-C		not specified	Uncertain significance (May 12, 2024)
17-79942150-G-A			Likely benign (Jul 01, 2022)
17-79942171-G-A			Benign (Oct 19, 2017)
17-79942205-G-A		not specified	Uncertain significance (Jun 06, 2023)
17-79944954-T-C		not specified	Uncertain significance (Jun 17, 2024)
17-79944958-G-A		not specified	Uncertain significance (Oct 27, 2021)
17-79944991-G-A		not specified	Uncertain significance (Jan 09, 2024)
17-79945004-C-A		not specified	Uncertain significance (Mar 21, 2023)
17-79945011-A-G		not specified	Uncertain significance (Aug 10, 2021)

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP