LINC02014

long intergenic non-protein coding RNA 2014, the group of Long intergenic non-protein coding RNAs

Basic information

Region (hg38): 3:130086132-130095921

Links

ENSG00000248243 ∙ NCBI:105374105 ∙ ∙ HGNC:52849 ∙ ∙ ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the LINC02014 gene.

• Inborn genetic diseases (11 variants)

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the LINC02014 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense						0
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding			8	3		11
Total	0	0	8	3	0

Variants in LINC02014

This is a list of pathogenic ClinVar variants found in the LINC02014 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
3-130091271-G-A		not specified	Uncertain significance (Dec 20, 2023)
3-130091277-G-A		not specified	Uncertain significance (Feb 06, 2023)
3-130091293-T-C		not specified	Uncertain significance (Apr 12, 2023)
3-130091304-G-A		not specified	Likely benign (Jul 15, 2021)
3-130091350-C-T		not specified	Uncertain significance (Jul 06, 2021)
3-130091368-C-T		not specified	Uncertain significance (Jan 02, 2024)
3-130092129-C-T		not specified	Uncertain significance (Apr 26, 2024)
3-130092172-C-T		not specified	Uncertain significance (Jan 22, 2024)
3-130092174-C-T		not specified	Uncertain significance (Feb 10, 2023)
3-130092175-G-A		not specified	Likely benign (Oct 27, 2022)
3-130092186-C-G		not specified	Uncertain significance (Nov 09, 2023)
3-130092201-G-A		not specified	Uncertain significance (Jun 16, 2022)
3-130092206-C-A		not specified	Uncertain significance (Oct 10, 2023)
3-130092219-A-G		not specified	Uncertain significance (Aug 30, 2021)
3-130093129-G-C		not specified	Likely benign (Jul 20, 2021)
3-130093136-C-T		not specified	Uncertain significance (Nov 02, 2021)
3-130094411-C-A		not specified	Uncertain significance (Dec 28, 2022)
3-130094424-A-G		not specified	Uncertain significance (Aug 30, 2021)
3-130094433-G-A		not specified	Uncertain significance (Dec 13, 2023)
3-130094459-C-T		not specified	Uncertain significance (Jul 26, 2022)
3-130094502-C-A		not specified	Uncertain significance (Aug 04, 2023)

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP