LINC02124

long intergenic non-protein coding RNA 2124, the group of Long intergenic non-protein coding RNAs

Basic information

Region (hg38): 16:1859900-1890762

Links

ENSG00000259947 ∙ NCBI:105371048 ∙ ∙ HGNC:52981 ∙ ∙ ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the LINC02124 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the LINC02124 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense						0
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	0	0	0

Variants in LINC02124

This is a list of pathogenic ClinVar variants found in the LINC02124 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
16-1862020-T-G		MEIOB-related disorder	Benign (Nov 07, 2019)
16-1862053-T-A		Spermatogenic failure 22	Pathogenic (Jan 22, 2024)
16-1862083-G-A		not specified	Uncertain significance (Feb 14, 2023)
16-1862092-A-G		not specified	Uncertain significance (Nov 18, 2022)
16-1862114-T-C		not specified	Uncertain significance (Mar 27, 2023)
16-1865795-C-G		not specified	Uncertain significance (Jun 29, 2023)
16-1865813-C-G		not specified	Uncertain significance (Jun 24, 2022)
16-1868103-C-T		MEIOB-related disorder	Likely benign (Mar 13, 2019)
16-1868124-T-G		MEIOB-related disorder	Benign (Oct 16, 2019)
16-1868142-T-C		MEIOB-related disorder	Likely benign (Aug 20, 2019)
16-1868152-C-A		not specified	Uncertain significance (Nov 22, 2022)

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP