LINC02136

long intergenic non-protein coding RNA 2136, the group of Long intergenic non-protein coding RNAs

Basic information

Region (hg38): 16:71366933-71426464

Links

ENSG00000261348 ∙ NCBI:105371333 ∙ ∙ HGNC:52995 ∙ ∙ ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the LINC02136 gene.

• Inborn genetic diseases (11 variants)

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the LINC02136 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense						0
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding			10	1		11
Total	0	0	10	1	0

Variants in LINC02136

This is a list of pathogenic ClinVar variants found in the LINC02136 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
16-71372177-A-G		not specified	Uncertain significance (Jul 20, 2022)
16-71377688-G-C		not specified	Uncertain significance (Jun 29, 2023)
16-71377693-G-C		not specified	Uncertain significance (May 23, 2023)
16-71382762-C-T		not specified	Uncertain significance (Dec 15, 2023)
16-71383379-G-C		not specified	Uncertain significance (Jul 08, 2022)
16-71383386-T-C		not specified	Uncertain significance (Jul 17, 2023)
16-71383404-C-G		not specified	Uncertain significance (Jan 02, 2024)
16-71383991-G-A		not specified	Uncertain significance (Mar 06, 2023)
16-71384353-A-G		not specified	Uncertain significance (Oct 04, 2022)
16-71384355-G-A		not specified	Uncertain significance (Nov 21, 2023)
16-71384784-G-A		not specified	Uncertain significance (May 18, 2023)
16-71385579-T-C		not specified	Likely benign (Jul 25, 2023)
16-71385585-C-T		not specified	Likely benign (Dec 11, 2023)
16-71385593-T-C		not specified	Uncertain significance (Apr 05, 2023)
16-71389788-G-A		not specified	Uncertain significance (Jan 12, 2024)
16-71389798-T-C		not specified	Uncertain significance (Aug 22, 2023)
16-71389837-T-C		not specified	Uncertain significance (Oct 25, 2022)

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP