LINC02245

long intergenic non-protein coding RNA 2245, the group of Long intergenic non-protein coding RNAs

Basic information

Links

ENSG00000237638

∙ NCBI:400958 ∙ ∙ HGNC:53134 ∙ ∙ ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the LINC02245 gene.

not provided (163 variants)
Spastic tetraplegia-thin corpus callosum-progressive postnatal microcephaly syndrome (24 variants)
Inborn genetic diseases (15 variants)
not specified (6 variants)
SLC1A4-related condition (1 variants)
Microcephaly (1 variants)

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the LINC02245 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense						0
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region ? Intron variants in splice region, excluding donor/acceptor (+/-2bp)						0
non coding ? UTR, intron and other, non coding variants	9 clinvar	7 clinvar	81 clinvar	64 clinvar	29 clinvar	190
Total	9	7	81	64	29

Highest pathogenic variant AF is 0.000105

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP