LINC02249

long intergenic non-protein coding RNA 2249, the group of Long intergenic non-protein coding RNAs

Basic information

Region (hg38): 15:30195583-30373471

Links

ENSG00000225930 ∙ NCBI:26082 ∙ ∙ HGNC:32351 ∙ ∙ ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the LINC02249 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the LINC02249 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense						0
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	0	0	0

Variants in LINC02249

This is a list of pathogenic ClinVar variants found in the LINC02249 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
15-30362336-G-A		not specified	Likely benign (Apr 22, 2022)
15-30362448-C-T		not specified	Uncertain significance (May 11, 2022)
15-30362558-G-A		not specified	Uncertain significance (Feb 15, 2023)
15-30362661-T-C		not specified	Uncertain significance (Apr 25, 2022)
15-30362774-A-C		not specified	Uncertain significance (Nov 20, 2024)
15-30367435-C-T		not specified	Uncertain significance (Feb 23, 2023)
15-30367473-A-G		not specified	Uncertain significance (May 14, 2024)
15-30367476-G-A		not specified	Uncertain significance (Oct 29, 2024)
15-30371133-A-G		not specified	Uncertain significance (Jul 19, 2022)
15-30371170-G-A		not specified	Uncertain significance (Oct 05, 2021)
15-30371172-A-G		not specified	Uncertain significance (Jun 09, 2022)
15-30372165-C-T		not specified	Uncertain significance (Dec 04, 2024)
15-30372170-T-C		not specified	Uncertain significance (Apr 08, 2024)
15-30372197-G-A		not specified	Uncertain significance (Nov 09, 2024)
15-30372208-G-C		not specified	Uncertain significance (Aug 02, 2023)
15-30372286-A-G			Likely benign (Jul 15, 2018)
15-30372326-C-G		not specified	Uncertain significance (Nov 13, 2023)
15-30372989-C-G		not specified	Uncertain significance (Aug 12, 2021)
15-30373016-A-G		not specified	Uncertain significance (Nov 10, 2024)
15-30373056-C-T		not specified	Uncertain significance (Dec 04, 2024)
15-30373137-T-C		not specified	Uncertain significance (Feb 16, 2023)

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP