LINC02259

long intergenic non-protein coding RNA 2259, the group of Long intergenic non-protein coding RNAs

Basic information

Region (hg38): 15:72575113-72640297

Links

ENSG00000259783 ∙ NCBI:102723640 ∙ ∙ HGNC:53172 ∙ ∙ ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the LINC02259 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the LINC02259 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense						0
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	0	0	0

Variants in LINC02259

This is a list of pathogenic ClinVar variants found in the LINC02259 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
15-72580745-C-T			Likely benign (Mar 13, 2022)
15-72580754-G-A			Likely benign (Nov 27, 2023)
15-72580817-A-G		ARIH1-related disorder	Benign (Jan 26, 2024)
15-72580931-C-T			Likely benign (Mar 24, 2023)
15-72580943-T-C			Likely benign (Sep 23, 2023)
15-72582093-G-C			Uncertain significance (Oct 13, 2023)
15-72582116-G-A			Likely benign (Jan 28, 2024)
15-72582129-C-A			Likely benign (Jan 04, 2024)
15-72582150-C-T			Likely benign (Jul 26, 2023)
15-72582159-A-G			Uncertain significance (Jun 01, 2022)
15-72582191-A-AT			Benign (Dec 26, 2023)
15-72582192-T-A			Uncertain significance (Sep 10, 2022)
15-72583187-TTTTTTTCTC-T			Likely benign (Mar 08, 2023)
15-72583188-T-C			Likely benign (Oct 09, 2023)
15-72583196-C-T			Likely benign (Apr 21, 2022)
15-72583227-A-C			Likely benign (Jun 09, 2023)
15-72583247-G-T			Likely benign (Mar 10, 2022)
15-72583278-T-G		not specified	Uncertain significance (Jun 29, 2023)
15-72583279-A-G			Uncertain significance (Jan 10, 2024)

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP