LINC02277

long intergenic non-protein coding RNA 2277, the group of Long intergenic non-protein coding RNAs

Basic information

Region (hg38): 14:44392110-44648997

Links

ENSG00000258487 ∙ NCBI:107984027 ∙ ∙ HGNC:53193 ∙ ∙ ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the LINC02277 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the LINC02277 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense						0
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	0	0	0

Variants in LINC02277

This is a list of pathogenic ClinVar variants found in the LINC02277 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
14-44504544-T-C		not specified	Uncertain significance (Oct 14, 2021)
14-44504916-G-A		not specified	Uncertain significance (Feb 21, 2024)
14-44504920-T-C		not specified	Likely benign (Jan 03, 2024)
14-44504920-TCTCCTCAGCTGGTAGAGACTGAACTTCAGCAGGGGC-T			Likely benign (Aug 04, 2017)
14-44504924-C-A		not specified	Uncertain significance (Aug 12, 2021)
14-44504951-A-AGGGGCCTCCTCAGCTGGTGGAGGCTGAACTTCAGAG			Benign (Dec 31, 2019)
14-44504956-C-A		not specified	Uncertain significance (Jan 27, 2022)
14-44504956-C-T		not specified	Uncertain significance (Dec 28, 2022)
14-44504967-G-A		not specified	Uncertain significance (Mar 12, 2024)
14-44504974-G-A		not specified	Likely benign (Jan 22, 2024)
14-44504974-G-C		not specified	Uncertain significance (Nov 05, 2021)
14-44504976-T-C		not specified	Uncertain significance (Mar 15, 2024)
14-44504981-T-A		not specified	Uncertain significance (Jan 22, 2024)
14-44504982-T-C		not specified	Uncertain significance (Mar 19, 2024)
14-44504992-C-T		not specified	Uncertain significance (Mar 23, 2022)
14-44505024-G-A		not specified	Uncertain significance (Mar 18, 2024)
14-44505083-C-T			Likely benign (Jul 01, 2022)
14-44505090-T-C		not specified	Uncertain significance (Jun 03, 2024)
14-44505097-G-A		not specified	Uncertain significance (Apr 06, 2024)
14-44505105-T-G		not specified	Uncertain significance (May 23, 2023)
14-44505130-C-T		not specified	Uncertain significance (Feb 17, 2024)
14-44505142-C-T		not specified	Uncertain significance (Mar 16, 2022)
14-44505151-G-T		not specified	Uncertain significance (May 15, 2024)
14-44505178-C-T		not specified	Uncertain significance (Nov 12, 2021)
14-44505206-C-G		not specified	Uncertain significance (Apr 12, 2024)

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP