LINC02298

long intergenic non-protein coding RNA 2298, the group of Long intergenic non-protein coding RNAs

Basic information

Region (hg38): 14:105032855-105101973

Links

ENSG00000257556 ∙ NCBI:102723354 ∙ ∙ HGNC:53216 ∙ ∙ ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the LINC02298 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the LINC02298 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense						0
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	0	0	0

Variants in LINC02298

This is a list of pathogenic ClinVar variants found in the LINC02298 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
14-105051004-T-A		not specified	Uncertain significance (Jul 25, 2023)
14-105051018-C-A		not specified	Uncertain significance (Jun 21, 2022)
14-105051083-C-A			Benign (Jun 27, 2018)
14-105051101-C-T		not specified	Uncertain significance (Mar 27, 2023)
14-105051155-C-G		not specified	Likely benign (Aug 17, 2021)
14-105051163-C-A		not specified	Uncertain significance (Oct 17, 2023)
14-105051202-G-A		not specified	Uncertain significance (Dec 14, 2023)
14-105051337-G-C		not specified	Uncertain significance (Jul 20, 2021)
14-105051347-C-A		not specified	Uncertain significance (Jan 08, 2024)
14-105051347-C-T		not specified	Likely benign (Aug 16, 2021)
14-105051370-G-A		not specified	Uncertain significance (Dec 20, 2022)
14-105051408-C-T			Benign (Jun 27, 2018)
14-105051475-C-A		not specified	Uncertain significance (Sep 26, 2023)
14-105051476-G-A		not specified	Uncertain significance (Jan 27, 2022)
14-105051545-C-T		not specified	Uncertain significance (Aug 12, 2021)
14-105051551-T-A			Uncertain significance (Mar 19, 2024)
14-105051585-C-G		not specified	Uncertain significance (May 28, 2024)
14-105051586-T-A		not specified	Uncertain significance (Mar 06, 2023)
14-105051598-G-A		not specified	Likely benign (May 23, 2024)
14-105051630-G-C			Benign (Jun 27, 2018)
14-105051641-T-C		not specified	Likely benign (Jun 16, 2023)
14-105051662-C-T		not specified	Uncertain significance (Jul 14, 2021)
14-105051673-C-T		not specified	Likely benign (Apr 24, 2024)
14-105051674-G-A		not specified	Uncertain significance (Oct 17, 2023)
14-105051707-C-T		not specified	Uncertain significance (Jun 17, 2024)

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP