LINC02690

long intergenic non-protein coding RNA 2690, the group of Long intergenic non-protein coding RNAs

Basic information

Region (hg38): 11:45749454-45805674

Links

ENSG00000255226 ∙ NCBI:105376658 ∙ ∙ HGNC:54194 ∙ ∙ ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the LINC02690 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the LINC02690 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense						0
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	0	0	0

Variants in LINC02690

This is a list of pathogenic ClinVar variants found in the LINC02690 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
11-45804038-TC-T			Benign (Apr 16, 2019)
11-45804190-A-T			Likely benign (Jul 02, 2019)
11-45804395-G-A			Benign (Jun 23, 2018)
11-45805010-A-G			Benign (Jun 23, 2018)
11-45805124-A-G		Leukocyte adhesion deficiency type II	Uncertain significance (Jan 13, 2018)
11-45805137-C-T		Leukocyte adhesion deficiency type II	Likely benign (Jan 13, 2018)
11-45805145-C-A		Leukocyte adhesion deficiency type II	Uncertain significance (Jan 12, 2018)
11-45805149-C-T		Leukocyte adhesion deficiency type II	Uncertain significance (Jan 12, 2018)
11-45805169-T-G		Leukocyte adhesion deficiency type II	Uncertain significance (Jan 13, 2018)
11-45805170-G-A		Leukocyte adhesion deficiency type II	Benign (Jun 23, 2018)
11-45805187-G-C		Leukocyte adhesion deficiency type II	Uncertain significance (Jan 13, 2018)
11-45805233-C-T		Leukocyte adhesion deficiency type II	Uncertain significance (Jan 13, 2018)
11-45805249-A-AAGCCCCG		Congenital disorder of glycosylation	Uncertain significance (Jun 14, 2016)
11-45805284-C-A		Leukocyte adhesion deficiency type II	Uncertain significance (Jan 13, 2018)
11-45805321-G-A		Leukocyte adhesion deficiency type II	Uncertain significance (Jan 12, 2018)
11-45805409-C-T		Leukocyte adhesion deficiency type II	Uncertain significance (Jan 13, 2018)
11-45805490-T-C		Leukocyte adhesion deficiency type II	Uncertain significance (Jan 12, 2018)
11-45805499-G-C		Leukocyte adhesion deficiency type II	Benign (Jun 29, 2018)
11-45805515-C-G		Leukocyte adhesion deficiency type II	Uncertain significance (Apr 27, 2017)
11-45805568-T-G		Leukocyte adhesion deficiency type II	Uncertain significance (Jan 13, 2018)
11-45805584-G-C		Leukocyte adhesion deficiency type II	Uncertain significance (Jan 13, 2018)
11-45805629-C-T		Leukocyte adhesion deficiency type II	Benign (Jan 13, 2018)

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP