LINC02729

long intergenic non-protein coding RNA 2729, the group of Long intergenic non-protein coding RNAs

Basic information

Region (hg38): 11:17644670-17697443

Links

ENSG00000255335 ∙ NCBI:102723330 ∙ ∙ HGNC:54246 ∙ ∙ ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the LINC02729 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the LINC02729 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense						0
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	0	0	0

Variants in LINC02729

This is a list of pathogenic ClinVar variants found in the LINC02729 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
11-17645509-T-C			Likely benign (Jun 16, 2018)
11-17645574-T-C		not specified	Benign/Likely benign (Jan 19, 2024)
11-17645578-C-T		not specified • OTOG-related disorder	Conflicting classifications of pathogenicity (Jan 25, 2024)
11-17645579-G-A		OTOG-related disorder	Uncertain significance (Mar 27, 2022)
11-17645592-G-C		not specified • Meniere disease	Benign/Likely benign (Jan 29, 2024)
11-17645593-GTGACCATCCGCA-G			Uncertain significance (Mar 21, 2022)
11-17645602-C-T			Uncertain significance (Feb 02, 2023)
11-17645615-G-A			Uncertain significance (Jan 06, 2022)
11-17645622-T-A		Autosomal recessive nonsyndromic hearing loss 18B	Uncertain significance (Sep 20, 2021)
11-17645640-C-T			Likely benign (Oct 25, 2023)
11-17645648-G-A		not specified	Uncertain significance (Jun 18, 2024)
11-17645658-C-T			Likely benign (Apr 27, 2023)
11-17645720-G-T			Likely benign (Sep 23, 2018)
11-17645736-C-T		not specified • OTOG-related disorder	Benign/Likely benign (Apr 01, 2024)
11-17645749-C-T			Likely benign (Jun 02, 2021)
11-17645764-T-G			Uncertain significance (Oct 25, 2022)
11-17645773-C-T		not specified	Likely benign (Jan 31, 2017)
11-17645779-C-T		not specified	Likely benign (Sep 05, 2023)
11-17645781-C-T			Uncertain significance (Feb 26, 2024)
11-17645809-C-T			Likely benign (May 01, 2022)
11-17645834-C-T		Autosomal recessive nonsyndromic hearing loss 18B	Likely pathogenic (Feb 28, 2023)
11-17645835-G-A		OTOG-related disorder	Uncertain significance (Mar 01, 2024)
11-17645848-G-A		not specified • OTOG-related disorder	Benign/Likely benign (Dec 24, 2023)
11-17645852-C-T			Uncertain significance (Mar 04, 2022)
11-17645853-G-A			Uncertain significance (Aug 11, 2021)

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP