LINC02729

long intergenic non-protein coding RNA 2729, the group of Long intergenic non-protein coding RNAs

Basic information

Region (hg38): 11:17644670-17697443

Links

ENSG00000255335 ∙ NCBI:102723330 ∙ ∙ HGNC:54246 ∙ ∙ ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the LINC02729 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the LINC02729 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense						0
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	0	0	0

Variants in LINC02729

This is a list of pathogenic ClinVar variants found in the LINC02729 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
11-17645509-T-C			Likely benign (Jun 16, 2018)
11-17645569-G-A			Uncertain significance (Apr 15, 2024)
11-17645574-T-C		not specified	Benign/Likely benign (Jul 07, 2024)
11-17645578-C-T		not specified • OTOG-related disorder	Conflicting classifications of pathogenicity (Apr 01, 2025)
11-17645579-G-A		OTOG-related disorder	Uncertain significance (Mar 27, 2022)
11-17645584-T-C			Uncertain significance (Nov 13, 2024)
11-17645592-G-C		not specified • Meniere disease	Benign/Likely benign (Jan 30, 2025)
11-17645593-GTGACCATCCGCA-G			Uncertain significance (Apr 29, 2024)
11-17645602-C-T			Uncertain significance (Feb 02, 2023)
11-17645615-G-A			Uncertain significance (Jan 06, 2022)
11-17645622-T-A		Autosomal recessive nonsyndromic hearing loss 18B	Uncertain significance (Sep 20, 2021)
11-17645640-C-T			Likely benign (Dec 01, 2024)
11-17645648-G-A		not specified	Conflicting classifications of pathogenicity (Jan 07, 2025)
11-17645658-C-T			Likely benign (Apr 27, 2023)
11-17645720-G-T			Likely benign (Sep 23, 2018)
11-17645736-C-T		not specified • OTOG-related disorder	Benign/Likely benign (Dec 04, 2024)
11-17645749-C-T			Likely benign (Jun 02, 2021)
11-17645764-T-G			Uncertain significance (Apr 22, 2024)
11-17645769-G-A		Autosomal recessive nonsyndromic hearing loss 18B	Uncertain significance (Jun 22, 2023)
11-17645773-C-T		not specified	Likely benign (Jan 31, 2017)
11-17645779-C-T		not specified	Likely benign (Sep 05, 2023)
11-17645780-G-A			Uncertain significance (Oct 10, 2024)
11-17645781-C-T			Uncertain significance (Feb 26, 2024)
11-17645809-C-T			Likely benign (May 01, 2022)
11-17645816-C-T		Autosomal recessive nonsyndromic hearing loss 18B	Pathogenic (Jan 09, 2025)

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP