LINC02819

long intergenic non-protein coding RNA 2819, the group of Long intergenic non-protein coding RNAs

Basic information

Region (hg38): 1:159466321-159558377

Links

ENSG00000224943 ∙ NCBI:105371462 ∙ ∙ HGNC:54350 ∙ ∙ ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the LINC02819 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the LINC02819 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense						0
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	0	0	0

Variants in LINC02819

This is a list of pathogenic ClinVar variants found in the LINC02819 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
1-159535127-T-C		not specified	Uncertain significance (Nov 28, 2023)
1-159535166-G-T		not specified	Uncertain significance (Jan 04, 2022)
1-159535173-T-C		not specified	Uncertain significance (Dec 18, 2023)
1-159535212-A-T		not specified	Uncertain significance (Jun 01, 2023)
1-159535227-G-A		not specified	Uncertain significance (Aug 28, 2023)
1-159535328-A-G		not specified	Uncertain significance (Dec 03, 2021)
1-159535367-A-T		not specified	Uncertain significance (Aug 10, 2021)
1-159535410-C-G		not specified	Uncertain significance (Feb 10, 2023)
1-159535412-T-A			Benign (May 08, 2018)
1-159535422-T-C		not specified	Uncertain significance (Apr 15, 2024)
1-159535445-C-T		not specified	Uncertain significance (Oct 14, 2021)
1-159535466-T-C		not specified	Uncertain significance (Jan 23, 2023)
1-159535470-T-C		not specified	Uncertain significance (Feb 11, 2022)
1-159535614-A-G		not specified	Uncertain significance (Jan 31, 2024)
1-159535656-T-C		not specified	Uncertain significance (May 31, 2023)
1-159535673-C-T		not specified	Uncertain significance (Aug 21, 2023)
1-159535678-A-T		not specified	Uncertain significance (Jan 10, 2023)
1-159535734-T-C		not specified	Uncertain significance (Dec 16, 2023)
1-159535748-A-G		not specified	Uncertain significance (Feb 14, 2023)
1-159535779-T-G		not specified	Uncertain significance (Oct 29, 2021)
1-159535796-G-A		not specified	Likely benign (Aug 17, 2021)
1-159535860-A-C		not specified	Uncertain significance (Jun 27, 2023)
1-159535931-G-T		not specified	Uncertain significance (Jan 05, 2022)

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP