LINC02840

long intergenic non-protein coding RNA 2840, the group of Long intergenic non-protein coding RNAs

Basic information

Region (hg38): 6:152754903-152875991

Links

ENSG00000224893 ∙ NCBI:105378065 ∙ ∙ HGNC:54374 ∙ ∙ ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the LINC02840 gene.

• Inborn genetic diseases (6 variants)
• not provided (5 variants)

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the LINC02840 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense						0
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding			6	3	2	11
Total	0	0	6	3	2

Variants in LINC02840

This is a list of pathogenic ClinVar variants found in the LINC02840 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
6-152755262-G-A			Likely benign (Dec 31, 2019)
6-152755292-T-A		not specified	Uncertain significance (Feb 28, 2024)
6-152755309-A-G		not specified	Uncertain significance (Jun 17, 2024)
6-152755349-A-G		not specified	Uncertain significance (Sep 22, 2022)
6-152755352-C-A		not specified	Uncertain significance (Jul 27, 2024)
6-152755369-G-A		not specified	Uncertain significance (May 31, 2023)
6-152756135-A-T		not specified	Uncertain significance (Apr 09, 2022)
6-152756140-C-T			Likely benign (Jan 23, 2018)
6-152756182-A-C			Benign (Dec 31, 2019)
6-152756194-C-T			Likely benign (Dec 11, 2018)
6-152756196-A-G		not specified	Uncertain significance (Aug 16, 2021)
6-152756197-C-T			Benign (Dec 31, 2019)
6-152756202-C-T		not specified	Uncertain significance (Nov 08, 2024)
6-152756239-G-C		not specified	Uncertain significance (Apr 16, 2024)
6-152756246-A-T		not specified	Uncertain significance (Aug 17, 2022)
6-152756255-G-A		not specified	Uncertain significance (Mar 20, 2023)
6-152757097-A-C		not specified	Uncertain significance (Feb 10, 2022)
6-152757113-C-T		not specified	Uncertain significance (Oct 06, 2022)

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP