LINC02851

long intergenic non-protein coding RNA 2851, the group of Long intergenic non-protein coding RNAs

Basic information

Region (hg38): 9:6644522-6727438

Links

ENSG00000236924 ∙ NCBI:105375968 ∙ ∙ HGNC:54387 ∙ ∙ ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the LINC02851 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the LINC02851 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense						0
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	0	0	0

Variants in LINC02851

This is a list of pathogenic ClinVar variants found in the LINC02851 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
9-6644547-C-G			Likely benign (Sep 18, 2018)
9-6644591-AGGGAGCC-A		Glycine encephalopathy	Likely benign (May 25, 2023)
9-6644594-G-A		Glycine encephalopathy	Likely benign (Oct 21, 2024)
9-6644594-G-C		Glycine encephalopathy	Likely benign (Oct 03, 2024)
9-6644597-C-A		Glycine encephalopathy	Likely benign (Nov 27, 2023)
9-6644601-C-T		Glycine encephalopathy	Likely benign (Feb 17, 2024)
9-6644602-C-T		Glycine encephalopathy	Likely benign (May 05, 2023)
9-6644603-C-T		Glycine encephalopathy	Likely benign (Sep 30, 2024)
9-6644604-G-C		Glycine encephalopathy	Likely benign (Jan 22, 2023)
9-6644605-G-C		Glycine encephalopathy	Likely benign (Apr 24, 2022)
9-6644606-C-G		Glycine encephalopathy	Likely benign (Aug 31, 2022)
9-6644606-C-T		Glycine encephalopathy	Likely benign (May 01, 2023)
9-6644613-C-A		Glycine encephalopathy	Pathogenic/Likely pathogenic (Jan 27, 2024)
9-6644613-C-G		Glycine encephalopathy	Pathogenic/Likely pathogenic (Apr 07, 2023)
9-6644616-A-ACAGGGTCTTCCATTTTCTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNGACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCCGG		Glycine encephalopathy	Pathogenic (Nov 13, 2023)
9-6644619-G-T		Glycine encephalopathy	Conflicting classifications of pathogenicity (Jan 06, 2025)
9-6644620-G-A		Glycine encephalopathy	Uncertain significance (Oct 12, 2023)
9-6644621-G-A		Glycine encephalopathy	Likely benign (Oct 17, 2024)
9-6644626-C-A		Glycine encephalopathy	Pathogenic (May 05, 2021)
9-6644628-AT-A		Glycine encephalopathy	Pathogenic (Feb 19, 2024)
9-6644629-T-C		not specified • Glycine encephalopathy	Conflicting classifications of pathogenicity (Feb 03, 2025)
9-6644631-TTC-T		Glycine encephalopathy	Likely pathogenic (Mar 30, 2022)
9-6644632-T-C		Glycine encephalopathy	Uncertain significance (Oct 06, 2022)
9-6644633-C-A		Glycine encephalopathy	Uncertain significance (Aug 19, 2022)
9-6644635-A-G		Glycine encephalopathy	Likely benign (May 03, 2022)

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP