LINC02929

long intergenic non-protein coding RNA 2929, the group of Long intergenic non-protein coding RNAs

Basic information

Region (hg38): 10:62520448-62672011

Links

ENSG00000285551 ∙ ∙ ∙ HGNC:55812 ∙ ∙ ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the LINC02929 gene.

• not provided (16 variants)
• Inborn genetic diseases (2 variants)
• Nephrolithiasis, uric acid, susceptibility to (1 variants)

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the LINC02929 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense						0
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding			2	3	13	18
Total	0	0	2	3	13

Variants in LINC02929

This is a list of pathogenic ClinVar variants found in the LINC02929 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
10-62622902-G-A			Benign (May 17, 2021)
10-62623199-A-G		not specified	Uncertain significance (Sep 27, 2021)
10-62654888-G-T			Likely benign (Jun 18, 2018)
10-62655271-G-A			Benign (May 16, 2021)
10-62655401-C-T		not specified	Likely benign (Jul 09, 2021)
10-62655424-A-A		Nephrolithiasis, uric acid, susceptibility to	Benign (Dec 31, 2019)
10-62655516-A-G			Uncertain significance (Jan 01, 2017)
10-62655641-G-C			Benign (Jun 11, 2018)
10-62655653-T-A			Benign (May 16, 2021)
10-62656216-G-A			Benign (May 24, 2021)
10-62656460-C-T			Benign (May 19, 2021)
10-62656530-A-G			Benign (May 16, 2021)
10-62666038-C-T			Benign (May 26, 2021)
10-62666153-C-A			Likely benign (Jul 11, 2017)
10-62666162-C-A			Benign (Feb 09, 2018)
10-62666296-G-T			Benign (May 16, 2021)
10-62670237-A-G			Benign (Jul 11, 2017)
10-62670472-C-A			Benign (May 22, 2021)

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP