LINC02931

long intergenic non-protein coding RNA 2931, the group of Long intergenic non-protein coding RNAs

Basic information

Region (hg38): X:137412444-137569203

Links

ENSG00000224765 ∙ ∙ ∙ HGNC:55853 ∙ ∙ ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the LINC02931 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the LINC02931 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense						0
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	0	0	0

Variants in LINC02931

This is a list of pathogenic ClinVar variants found in the LINC02931 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
X-137565967-C-T			Benign (May 17, 2021)
X-137566213-C-T		Heterotaxy, visceral, 1, X-linked • Congenital heart defects 1, nonsyndromic, 1 • VACTERL association, X-linked, with or without hydrocephalus	Uncertain significance (Jan 12, 2018)
X-137566268-C-A		Heterotaxy, visceral, 1, X-linked • VACTERL association, X-linked, with or without hydrocephalus	Uncertain significance (Jan 13, 2018)
X-137566357-C-T		Heterotaxy, visceral, 1, X-linked • VACTERL association, X-linked, with or without hydrocephalus	Uncertain significance (Jan 13, 2018)
X-137566523-A-C		Heterotaxy, visceral, 1, X-linked • VACTERL association, X-linked, with or without hydrocephalus	Uncertain significance (Jan 13, 2018)
X-137566709-C-T		Heterotaxy, visceral, 1, X-linked	Likely benign (Aug 23, 2022)
X-137566710-G-C		Heterotaxy, visceral, 1, X-linked	Conflicting classifications of pathogenicity (Mar 26, 2021)
X-137566717-C-G		Inborn genetic diseases	Uncertain significance (Dec 20, 2023)
X-137566722-T-C			Uncertain significance (Dec 13, 2022)
X-137566727-T-C		Heterotaxy, visceral, 1, X-linked	Likely benign (Nov 28, 2023)
X-137566740-G-T		Heterotaxy, visceral, 1, X-linked • VACTERL association, X-linked, with or without hydrocephalus • not specified • Congenital heart defects 1, nonsyndromic, 1	Benign/Likely benign (Jul 01, 2024)
X-137566745-C-T		Heterotaxy, visceral, 1, X-linked	Likely benign (May 06, 2022)
X-137566766-C-G		Inborn genetic diseases	Uncertain significance (Jan 03, 2017)
X-137566767-G-C		VACTERL association, X-linked, with or without hydrocephalus	Uncertain significance (-)
X-137566771-T-C		ZIC3-related disorder	Uncertain significance (Apr 17, 2024)
X-137566783-A-T		Heterotaxy, visceral, 1, X-linked	Uncertain significance (Nov 08, 2019)
X-137566788-G-T		Heterotaxy, visceral, 1, X-linked • Inborn genetic diseases	Uncertain significance (Oct 13, 2023)
X-137566789-C-T		Heterotaxy, visceral, 1, X-linked	Likely benign (Jul 17, 2023)
X-137566796-G-A		Heterotaxy, visceral, 1, X-linked	Uncertain significance (Jul 21, 2018)
X-137566799-GCTGA-G		Heterotaxy, visceral, 1, X-linked	Pathogenic (Jan 12, 2023)
X-137566807-C-T		VACTERL association, X-linked, with or without hydrocephalus • Heterotaxy, visceral, 1, X-linked	Uncertain significance (Jan 12, 2018)
X-137566819-C-A		Heterotaxy, visceral, 1, X-linked	Pathogenic (May 28, 2018)
X-137566819-C-G		Heterotaxy, visceral, 1, X-linked	Pathogenic (Nov 27, 2019)
X-137566822-C-G		Congenital heart defects 1, nonsyndromic, 1 • VACTERL association, X-linked, with or without hydrocephalus • Heterotaxy, visceral, 1, X-linked	Conflicting classifications of pathogenicity (Jan 12, 2018)
X-137566825-ACGC-A		Heterotaxy, visceral, 1, X-linked • ZIC3-related disorder	Conflicting classifications of pathogenicity (May 28, 2019)

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP