GeneBe

LINC03076

long intergenic non-protein coding RNA 3076, the group of Long intergenic non-protein coding RNAs

Basic information

Region (hg38): 7:112522260-112896625

Links

ENSG00000223646 ∙ NCBI:100996249 ∙ ∙ HGNC:56656 ∙ ∙ ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the LINC03076 gene.

  • Inborn genetic diseases (27 variants)
  • not provided (1 variants)

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the LINC03076 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type Pathogenic Likely pathogenic VUS Likely benign Benign Sum
synonymous
0
missense
0
nonsense
0
start loss
0
frameshift
0
inframe indel
0
splice donor/acceptor (+/-2bp)
0
splice region
0
non coding
27
clinvar
1
clinvar
 28
Total 0 0 27 0 1

Variants in LINC03076

This is a list of pathogenic ClinVar variants found in the LINC03076 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position Type Phenotype Significance ClinVar
7-112767238-C-T not specified Uncertain significance (Apr 09, 2024)3326843
7-112767447-A-T not specified Uncertain significance (Jun 16, 2023)2601401
7-112767561-A-G not specified Uncertain significance (Jun 24, 2022)2232311
7-112767625-C-T not specified Uncertain significance (Nov 13, 2023)3178945
7-112767642-G-C not specified Uncertain significance (Apr 05, 2023)2512256
7-112767696-T-G not specified Uncertain significance (Nov 02, 2023)3178943
7-112767715-T-C not specified Uncertain significance (Dec 20, 2021)2268448
7-112767730-G-A not specified Uncertain significance (Nov 09, 2022)2405807
7-112772814-G-T not specified Uncertain significance (Nov 20, 2023)3178942
7-112772849-G-A not specified Uncertain significance (Jan 03, 2024)3178941
7-112772858-A-G not specified Uncertain significance (May 23, 2023)2549732
7-112772864-C-T not specified Uncertain significance (May 17, 2023)2523655
7-112772894-T-G not specified Uncertain significance (May 18, 2023)2508086
7-112772957-T-C not specified Uncertain significance (May 09, 2022)2288006
7-112773023-T-G not specified Uncertain significance (Dec 26, 2023)3178939
7-112775257-T-A not specified Uncertain significance (Sep 16, 2021)2250429
7-112775267-A-T not specified Uncertain significance (Dec 08, 2023)3178938
7-112775314-G-T not specified Uncertain significance (Jun 16, 2023)2602809
7-112775315-T-C not specified Uncertain significance (Feb 28, 2023)2491295
7-112783740-A-C not specified Uncertain significance (Jun 28, 2023)2607132
7-112783898-T-A not specified Uncertain significance (Dec 21, 2023)3178948
7-112783964-T-A not specified Uncertain significance (Oct 14, 2021)2255403
7-112784020-A-G not specified Uncertain significance (Jan 03, 2022)2268722
7-112784096-T-G not specified Uncertain significance (Aug 01, 2022)2403053
7-112784174-C-G not specified Uncertain significance (Oct 03, 2023)3178947

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP