GeneBe

LIX1-AS1

LIX1 and RIOK2 antisense RNA 1, the group of Antisense RNAs

Basic information

Region (hg38): 5:97089075-97439742

Links

ENSG00000251513 ∙ NCBI:101926893 ∙ ∙ HGNC:52976 ∙ ∙ ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the LIX1-AS1 gene.

  • Inborn genetic diseases (23 variants)
  • not provided (4 variants)

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the LIX1-AS1 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type Pathogenic Likely pathogenic VUS Likely benign Benign Sum
synonymous
0
missense
0
nonsense
0
start loss
0
frameshift
0
inframe indel
0
splice donor/acceptor (+/-2bp)
0
splice region
0
non coding
23
clinvar
4
clinvar
 27
Total 0 0 23 0 4

Variants in LIX1-AS1

This is a list of pathogenic ClinVar variants found in the LIX1-AS1 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position Type Phenotype Significance ClinVar
5-97094790-A-T not specified Uncertain significance (Sep 30, 2021)2252913
5-97094989-C-T not specified Uncertain significance (Jun 18, 2021)2233540
5-97096850-C-T not specified Uncertain significance (Feb 22, 2023)2456043
5-97105248-A-T not specified Uncertain significance (Feb 17, 2024)3119126
5-97107364-G-A not specified Uncertain significance (Dec 21, 2023)3119125
5-97107395-T-C not specified Uncertain significance (May 06, 2022)2287927
5-97107472-C-T not specified Uncertain significance (Aug 28, 2023)2599660
5-97107473-G-A not specified Uncertain significance (Jan 02, 2024)3119124
5-97124507-A-C not specified Uncertain significance (Dec 20, 2023)3119123
5-97124624-C-T not specified Uncertain significance (Mar 15, 2024)3290844
5-97142542-A-G not specified Uncertain significance (Jul 09, 2021)2236113
5-97163077-C-T not specified Uncertain significance (Mar 29, 2023)2512957
5-97163122-C-T not specified Uncertain significance (Feb 28, 2023)2463754
5-97163136-T-C not specified Uncertain significance (Oct 03, 2023)3154464
5-97163200-C-T Benign (Apr 24, 2018)768022
5-97163231-A-G Benign (Apr 24, 2018)768023
5-97165077-C-T not specified Uncertain significance (Jan 26, 2022)2272786
5-97167473-G-A not specified Uncertain significance (Oct 04, 2022)2349011
5-97167475-C-A not specified Uncertain significance (Mar 25, 2024)3314503
5-97167500-A-G not specified Uncertain significance (Nov 07, 2022)2391459
5-97167530-T-C not specified Uncertain significance (Nov 24, 2021)2253824
5-97167551-A-G not specified Uncertain significance (Feb 28, 2023)2481958
5-97167603-T-G not specified Uncertain significance (May 30, 2024)3314500
5-97167645-C-T not specified Uncertain significance (Sep 17, 2021)2252012
5-97167651-C-G not specified Uncertain significance (Jun 17, 2024)3314504

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP