LMX1A-AS2

LMX1A antisense RNA 2, the group of Antisense RNAs

Basic information

Region (hg38): 1:165210627-165213090

Links

ENSG00000224702 ∙ NCBI:105371561 ∙ ∙ HGNC:40343 ∙ ∙ ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the LMX1A-AS2 gene.

• not provided (2 variants)
• Autosomal dominant nonsyndromic hearing loss 7 (1 variants)

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the LMX1A-AS2 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense						0
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding	1				2	3
Total	1	0	0	0	2

Variants in LMX1A-AS2

This is a list of pathogenic ClinVar variants found in the LMX1A-AS2 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
1-165210637-C-A			Benign (May 14, 2021)
1-165210694-G-A		LMX1A-related disorder	Likely benign (Jan 01, 2024)
1-165210702-C-T		LMX1A-related disorder	Likely benign (May 13, 2019)
1-165210725-C-G		Autosomal dominant nonsyndromic hearing loss 7	Pathogenic (Feb 12, 2020)
1-165210732-G-A			Uncertain significance (May 01, 2024)
1-165210852-T-A			Benign (May 12, 2021)

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP