LNCRNA-IUR

lncRNA imatinib upregulated, the group of Long non-coding RNAs with non-systematic symbols

Basic information

Region (hg38): 11:95150499-95309854

Links

ENSG00000245552 ∙ NCBI:101929295 ∙ ∙ HGNC:55755 ∙ ∙ ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the LNCRNA-IUR gene.

• Inborn genetic diseases (13 variants)
• not provided (3 variants)

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the LNCRNA-IUR gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense						0
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding			14		2	16
Total	0	0	14	0	2

Variants in LNCRNA-IUR

This is a list of pathogenic ClinVar variants found in the LNCRNA-IUR region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
11-95173280-C-T		not specified	Uncertain significance (Sep 22, 2022)
11-95177769-G-A			Benign (Mar 09, 2018)
11-95178795-A-G		not specified	Uncertain significance (Jul 14, 2021)
11-95178804-G-A		not specified	Uncertain significance (Nov 30, 2022)
11-95184492-G-A		not specified	Uncertain significance (Apr 17, 2023)
11-95184542-A-G		not specified	Uncertain significance (Dec 18, 2023)
11-95185286-C-G		not specified	Uncertain significance (Apr 25, 2022)
11-95185318-C-T		not specified	Uncertain significance (Mar 30, 2024)
11-95185357-A-C		not specified	Uncertain significance (Jan 19, 2024)
11-95189810-C-T		not specified	Uncertain significance (Aug 11, 2022)
11-95189867-T-C		not specified	Uncertain significance (Jul 26, 2022)
11-95189920-A-T		not specified	Uncertain significance (Aug 22, 2023)
11-95191451-T-C		not specified	Uncertain significance (May 30, 2024)
11-95191580-C-T		not specified	Uncertain significance (Jun 07, 2023)
11-95191585-G-C			Uncertain significance (Oct 25, 2017)
11-95191611-A-C			Benign (Apr 04, 2018)
11-95193491-G-T		not specified	Uncertain significance (Jul 09, 2021)
11-95193521-T-C		not specified	Uncertain significance (May 23, 2023)
11-95230851-C-T		not specified	Uncertain significance (Jun 22, 2023)

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP