LRRC37A2

leucine rich repeat containing 37 member A2

Basic information

Region (hg38): 17:46511508-46556910

Links

ENSG00000238083 ∙ NCBI:474170 ∙ OMIM:616556 ∙ HGNC:32404 ∙ Uniprot:A6NM11 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the LRRC37A2 gene.

• not_specified (129 variants)
• not_provided (1 variants)

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the LRRC37A2 gene is commonly pathogenic or not. These statistics are base on transcript: NM_001006607.3. Only rare variants are included in the table.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Effect	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense			109	19		128
nonsense						0
start loss						0
frameshift						0
splice donor/acceptor (+/-2bp)						0
Total	0	0	109	19	0

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
LRRC37A2	protein_coding	protein_coding	ENST00000576629	14	44140

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
1.14e-7	0.801	124540	2	55	124597	0.000229

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	-0.376	328	309	1.06	0.0000159	10729
Missense in Polyphen		88	83.341	1.0559		2741
Synonymous	0.0535	123	124	0.994	0.00000726	3377
Loss of Function	1.44	14	21.1	0.663	0.00000107	783

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.0000623	0.0000623
Ashkenazi Jewish	0.00	0.00
East Asian	0.00335	0.00302
Finnish	0.00	0.00
European (Non-Finnish)	0.00000927	0.00000884
Middle Eastern	0.00335	0.00302
South Asian	0.00	0.00
Other	0.00	0.00

dbNSFP

Source: dbNSFP

Essentials

• essential_gene_CRISPR: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.0236

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Lrrc37a

Gene ontology

• Cellular component: integral component of membrane