LURAP1

leucine rich adaptor protein 1

Basic information

Region (hg38): 1:46203334-46221256

Previous symbols: [ "C1orf190" ]

Links

ENSG00000171357 ∙ NCBI:541468 ∙ OMIM:616129 ∙ HGNC:32327 ∙ Uniprot:Q96LR2 ∙ AlphaFold ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the LURAP1 gene.

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the LURAP1 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous				1		1
missense			20		1	21
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding						0
Total	0	0	20	1	1

Variants in LURAP1

This is a list of pathogenic ClinVar variants found in the LURAP1 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
1-46203464-G-T		not specified	Uncertain significance (Mar 19, 2024)
1-46203553-C-A		not specified	Uncertain significance (Nov 29, 2023)
1-46203559-C-T		not specified	Uncertain significance (Aug 04, 2024)
1-46203569-C-T		not specified	Uncertain significance (May 21, 2024)
1-46203578-C-G		not specified	Uncertain significance (Nov 15, 2024)
1-46219699-G-T		not specified	Uncertain significance (Nov 07, 2023)
1-46219721-T-G		not specified	Uncertain significance (Mar 08, 2025)
1-46219751-A-G		not specified	Uncertain significance (Jun 26, 2024)
1-46219762-G-A		not specified	Uncertain significance (May 28, 2024)
1-46219780-T-A		not specified	Uncertain significance (Mar 10, 2025)
1-46219789-C-T		not specified	Uncertain significance (Nov 28, 2023)
1-46219849-G-A		not specified	Uncertain significance (Feb 27, 2024)
1-46219855-C-T		not specified	Uncertain significance (Jan 10, 2023)
1-46219871-G-A		not specified	Uncertain significance (Dec 12, 2024)
1-46219898-C-A		not specified	Uncertain significance (Nov 24, 2024)
1-46219912-C-T		not specified	Uncertain significance (Jun 17, 2024)
1-46219913-G-A		not specified	Uncertain significance (Oct 18, 2021)
1-46219930-A-C		not specified	Uncertain significance (Jun 23, 2023)
1-46219960-A-G		not specified	Uncertain significance (Jan 18, 2025)
1-46219963-G-A		not specified	Uncertain significance (Mar 21, 2023)
1-46220002-G-A		not specified	Uncertain significance (Feb 22, 2025)
1-46220107-G-A		not specified	Uncertain significance (Aug 28, 2024)
1-46220120-A-G		not specified	Benign (Mar 28, 2016)
1-46220161-C-G		not specified	Uncertain significance (Oct 10, 2023)
1-46220169-C-T			Likely benign (Jan 01, 2023)

GnomAD

Source: gnomAD

Gene	Type	Bio Type	Transcript	Coding Exons	Length
LURAP1	protein_coding	protein_coding	ENST00000371980	2	17928

pLI Probability LOF Intolerant	pRec Probability LOF Recessive	Individuals with no LOFs	Individuals with Homozygous LOFs	Individuals with Heterozygous LOFs	Defined	p
0.0118	0.859	125738	1	8	125747	0.0000358

	Z-Score	Observed	Expected	Observed/Expected	Mutation Rate	Total Possible in Transcript
Missense	0.343	125	136	0.917	0.00000743	1527
Missense in Polyphen		38	47.829	0.7945		550
Synonymous	0.511	53	58.0	0.915	0.00000316	509
Loss of Function	1.24	4	7.73	0.518	4.97e-7	75

LoF frequencies by population

Ethnicity	Sum of pLOFs	p
African & African-American	0.0000615	0.0000615
Ashkenazi Jewish	0.00	0.00
East Asian	0.00	0.00
Finnish	0.00	0.00
European (Non-Finnish)	0.0000554	0.0000527
Middle Eastern	0.00	0.00
South Asian	0.000107	0.0000653
Other	0.00	0.00

dbNSFP

Source: dbNSFP

• Function: FUNCTION: Acts as an activator of the canonical NF-kappa-B pathway and drive the production of proinflammatory cytokines. Promotes the antigen (Ag)-presenting and priming function of dendritic cells via the canonical NF-kappa-B pathway (PubMed:21048106). In concert with MYO18A and CDC42BPA/CDC42BPB, is involved in modulating lamellar actomyosin retrograde flow that is crucial to cell protrusion and migration. Activates CDC42BPA/CDC42BPB and targets it to actomyosin through its interaction with MYO18A, leading to MYL9/MLC2 phosphorylation and MYH9/MYH10-dependent actomyosin assembly in the lamella (By similarity). {ECO:0000250|UniProtKB:D4A8G3, ECO:0000269|PubMed:21048106}.

Recessive Scores

• pRec: 0.0953

Intolerance Scores

• rvis_EVS: 0.48
• rvis_percentile_EVS: 79.25

Haploinsufficiency Scores

• pHI: 0.209
• hipred: N
• hipred_score: 0.310
• ghis: 0.493

Essentials

• essential_gene_CRISPR: N
• essential_gene_CRISPR2: N
• essential_gene_gene_trap: N
• gene_indispensability_pred: N
• gene_indispensability_score: 0.114

Gene Damage Prediction

	All	Recessive	Dominant
Mendelian	Medium	Medium	Medium
Primary Immunodeficiency	Medium	Medium	Medium
Cancer	Medium	Medium	Medium

Mouse Genome Informatics

• Gene name: Lurap1

Zebrafish Information Network

• Gene name: lurap1
• Affected structure: fast muscle cell
• Phenotype tag: abnormal
• Phenotype quality: disorganized

Gene ontology

• Biological process: positive regulation of cytokine production;cell migration;actomyosin structure organization;positive regulation of I-kappaB kinase/NF-kappaB signaling
• Cellular component: cytoplasm;actomyosin;intracellular membrane-bounded organelle
• Molecular function: protein binding