MADCAM1-AS1

MADCAM1 antisense RNA 1, the group of Antisense RNAs

Basic information

Region (hg38): 19:490046-532972

Links

ENSG00000266933 ∙ NCBI:105372232 ∙ ∙ HGNC:55315 ∙ ∙ ∙ GenCC ∙ jax ∙ Sfari ∙ GnomAD ∙ Pubmed ∙ ClinVar

Phenotypes

GenCC

Source: genCC

No genCC data.

ClinVar

This is a list of variants' phenotypes submitted to ClinVar and linked to the MADCAM1-AS1 gene.

• Inborn genetic diseases (24 variants)
• not provided (2 variants)

Variants pathogenicity by type

Statistics on ClinVar variants can assist in determining whether a specific variant type in the MADCAM1-AS1 gene is commonly pathogenic or not.

In the table, we include only reliable ClinVar variants with their consequences to MANE Select, Mane Plus Clinical transcripts, or transcripts with TSL equals 1. Click the count to view the source variants.

Warning: slight differences between displayed counts and the number of variants in ClinVar may occur, primarily due to (1) the application of a different transcript and/or consequence by our variant effect predictor or (2) differences in clinical significance: we classify Benign/Likely benign variants as Likely benign and Pathogenic/Likely pathogenic variants as Likely pathogenic.

Variant type	Pathogenic	Likely pathogenic	VUS	Likely benign	Benign	Sum
synonymous						0
missense						0
nonsense						0
start loss						0
frameshift						0
inframe indel						0
splice donor/acceptor (+/-2bp)						0
splice region						0
non coding			21	4	1	26
Total	0	0	21	4	1

Variants in MADCAM1-AS1

This is a list of pathogenic ClinVar variants found in the MADCAM1-AS1 region.

You can filter this list by clicking the number of variants in the Variants pathogenicity by type table.

Position	Type	Phenotype	Significance	ClinVar
19-496528-C-T		not specified	Uncertain significance (Jun 30, 2023)
19-497884-T-C		not specified	Uncertain significance (Nov 09, 2024)
19-497907-C-T		not specified	Uncertain significance (Nov 10, 2022)
19-497929-C-T		not specified	Uncertain significance (Aug 12, 2022)
19-497932-G-T		not specified	Uncertain significance (Jan 10, 2022)
19-497941-G-A		not specified	Uncertain significance (Jul 16, 2024)
19-497946-G-A		not specified	Uncertain significance (May 10, 2024)
19-497953-T-C		not specified	Uncertain significance (Nov 14, 2024)
19-497978-C-A		not specified	Uncertain significance (Jan 08, 2024)
19-497985-G-T		not specified	Uncertain significance (Nov 01, 2022)
19-498066-G-A		not specified	Uncertain significance (Feb 17, 2023)
19-498562-C-T		not specified	Uncertain significance (Jan 16, 2024)
19-498571-A-G		not specified	Uncertain significance (Dec 03, 2024)
19-498609-C-A		not specified	Uncertain significance (Dec 02, 2024)
19-498639-G-T		not specified	Uncertain significance (Sep 22, 2023)
19-498663-C-G		not specified	Likely benign (Sep 14, 2023)
19-498669-G-A		not specified	Uncertain significance (Mar 12, 2024)
19-498688-G-A		not specified	Likely benign (Mar 31, 2024)
19-498717-G-A		not specified	Uncertain significance (Nov 12, 2021)
19-498742-G-A		not specified	Uncertain significance (Mar 20, 2024)
19-498747-C-T		not specified	Uncertain significance (May 24, 2023)
19-498774-G-A		not specified	Uncertain significance (Mar 25, 2024)
19-498781-T-G		not specified	Uncertain significance (Oct 29, 2021)
19-498811-G-A		not specified	Uncertain significance (Oct 16, 2023)
19-498813-C-A		not specified	Uncertain significance (May 26, 2024)

GnomAD

Source: gnomAD

dbNSFP

Source: dbNSFP