MAF

protein-coding

MAF bZIP transcription factor, the group of Basic leucine zipper proteins

Gene summary

The protein encoded by this gene is a DNA-binding, leucine zipper-containing transcription factor that acts as a homodimer or as a heterodimer. Depending on the binding site and binding partner, the encoded protein can be a transcriptional activator or repressor. This protein plays a role in the regulation of several cellular processes, including embryonic lens fiber cell development, increased T-cell susceptibility to apoptosis, and chondrocyte terminal differentiation. Defects in this gene are a cause of juvenile-onset pulverulent cataract as well as congenital cerulean cataract 4 (CCA4). Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jan 2010]

MANE transcript

NM_005360.5

Inheritance

AD, AR

ClinVar variants

P:35U:118B:60

Top phenotype

Ayme-Gripp syndrome

gnomAD constraint

pLI —, LoF o/e 0.11

Max pathogenic AF

—

Genomic locus

chr16:79,585,843-79,600,737

External References & Databases

Transcript & Mutation Effects

hg38 • Region Span ~14.9 kb
Loading mutation effect viewer...

GenCC Phenotypes & Disease Associations

Curated gene-disease validity assertions and inheritance patterns

cerulean cataractSUPPORTIVE

Inheritance Pattern: AD

Disease ID:MONDO:0020374

Submitter: Orphanet

Ayme-Gripp syndromeSTRONG

Inheritance Pattern: AD

Disease ID:MONDO:0010992

Submitter: Ambry Genetics

Ayme-Gripp syndromeSTRONG

Inheritance Pattern: AD

Disease ID:MONDO:0010992

Submitter: PanelApp Australia

cataract 21 multiple typesSTRONG

Inheritance Pattern: AD

Disease ID:MONDO:0012437

Submitter: Ambry Genetics

Ayme-Gripp syndromeSTRONG

Inheritance Pattern: AD

Disease ID:MONDO:0010992

Submitter: Labcorp Genetics (formerly Invitae)

Ayme-Gripp syndromeDEFINITIVE

Inheritance Pattern: AD

Disease ID:MONDO:0010992

Submitter: G2P

pulverulent cataractSUPPORTIVE

Inheritance Pattern: AD

Disease ID:MONDO:0011430

Submitter: Orphanet

Fine-Lubinsky syndromeSUPPORTIVE

Inheritance Pattern: AR

Disease ID:MONDO:0011049

Submitter: Orphanet

cataract - microcornea syndromeSUPPORTIVE

Inheritance Pattern: AD

Disease ID:MONDO:0015300

Submitter: Orphanet

cataract 21 multiple typesDEFINITIVE

Inheritance Pattern: AD

Disease ID:MONDO:0012437

Submitter: G2P

Clinical Genomic Database (CGD)

Ayme-Gripp syndromeAD

Manifestation: Audiologic/Otolaryngologic; Craniofacial; Neurologic; Ophthalmologic

Intervention: Audiologic/Otolaryngologic

Rationale: In Ayme-Gripp syndrome, early recognition and treatment of hearing impairment may improve outcomes, including speech and language development

Refs: 8834052; 8867660; 11772997; 16470690; 17935251; 24664492; 25865493Source: CGD (NHGRI)

ClinVar Associated Diseases & Phenotypes

Reported disease conditions connected to MAF variants in ClinVar

7 Conditions Cataloged
not providedTotal: 100
Ayme-Gripp syndromeTotal: 98
Cataract 21 multiple typesTotal: 90
not specifiedTotal: 39
Inborn genetic diseasesTotal: 32
MAF-related disorderTotal: 31
Developmental cataractTotal: 4

ClinVar Variants & Pathogenicity by Type

Statistics based on transcript NM_005360.5. Only rare variants are included.

We include only reliable ClinVar variants with their consequences to MANE Select, MANE Plus Clinical transcripts, or transcripts with TSL equal to 1. Click a count to filter the variants table below.

Slight differences between displayed counts and ClinVar may occur due to a different transcript/consequence chosen by our variant effect predictor, or because we classify Benign/Likely benign as Likely benign and Pathogenic/Likely pathogenic as Likely pathogenic.

EffectPLPVUSLBBSum
synonymous
1
clinvar
3
clinvar
44
clinvar
1
clinvar
49
missense
9
clinvar
20
clinvar
100
clinvar
11
clinvar
4
clinvar
144
nonsense
7
clinvar
7
start loss
1
clinvar
1
frameshift
2
clinvar
2
clinvar
7
clinvar
11
splice donor/acceptor (+/-2bp)
1
clinvar
1
Total1223118555213

Highest pathogenic variant AF is 6.8433434e-7

Loading ClinVar variants...

Transcript Catalog

Annotated transcript isoforms across RefSeq and Ensembl databases

Showing 4 of 12 transcripts
Transcript IDSourceProtein IDCoding ExonsMANE Status
NM_005360.5RefSeqNP_005351.22MANE Select
ENST00000326043.5EnsemblENSP00000327048.42MANE Select
NM_001031804.3RefSeqNP_001026974.11Standard
ENST00000393350.1EnsemblENSP00000377019.11Standard

Gene Ontology (GO) Annotations & Pathways

Biological processes, molecular functions, cellular components and pathways

Pathways ConsensusPathDB

  • Inflammatory bowel disease (IBD) - Homo sapiens (human)
  • Th1 and Th2 cell differentiation - Homo sapiens (human)
  • Transcriptional misregulation in cancer - Homo sapiens (human)
  • Tacrolimus/Cyclosporine Pathway, Pharmacodynamics
  • Transcriptional activation by NRF2

Biological Process

  • negative regulation of transcription by RNA polymerase II
  • cytokine production
  • transcription by RNA polymerase II
  • regulation of chondrocyte differentiation
  • positive regulation of transcription by RNA polymerase II

Molecular Function

  • RNA polymerase II proximal promoter sequence-specific DNA binding
  • DNA-binding transcription factor activity, RNA polymerase II-specific
  • DNA-binding transcription factor activity
  • protein binding
  • sequence-specific DNA binding

Cellular Component

  • chromatin
  • nucleus
  • cytoplasm

gnomAD Constraint

Source: gnomAD

Gene type
protein_coding
Transcript type
protein_coding
Transcript
ENST00000326043
Coding exons
2
Length
14872
Individuals with no LoFs
125465
Homozygous LoFs
0
Heterozygous LoFs
1
Defined
125466
p
0.00000399
Z-ScoreObservedExpectedObserved/ExpectedMutation RateTotal Possible
Missense1.181311750.7490.000008382581
Missense (PolyPhen)3446.8650.72549562
Synonymous-2.5510879.21.360.00000393850
Loss of Function2.4418.830.1133.88e-7105

Population LoF Frequency

PopulationCAFp-valueStatus
African00.0absent
Latino/Admixed American0.0000290.000029rare
Ashkenazi Jewish00.0absent
East Asian00.0absent
Finnish00.0absent
European (Non-Finnish)00.0absent
South Asian00.0absent
Other00.0absent

dbNSFP Gene Annotations

Source: dbNSFP

Function
FUNCTION: Acts as a transcriptional activator or repressor. Involved in embryonic lens fiber cell development. Recruits the transcriptional coactivators CREBBP and/or EP300 to crystallin promoters leading to up-regulation of crystallin gene during lens fiber cell differentiation. Activates the expression of IL4 in T helper 2 (Th2) cells. Increases T-cell susceptibility to apoptosis by interacting with MYB and decreasing BCL2 expression. Together with PAX6, transactivates strongly the glucagon gene promoter through the G1 element. Activates transcription of the CD13 proximal promoter in endothelial cells. Represses transcription of the CD13 promoter in early stages of myelopoiesis by affecting the ETS1 and MYB cooperative interaction. Involved in the initial chondrocyte terminal differentiation and the disappearance of hypertrophic chondrocytes during endochondral bone development. Binds to the sequence 5'-[GT]G[GC]N[GT]NCTCAGNN-3' in the L7 promoter. Binds to the T-MARE (Maf response element) sites of lens-specific alpha- and beta-crystallin gene promoters. Binds element G1 on the glucagon promoter. Binds an AT-rich region adjacent to the TGC motif (atypical Maf response element) in the CD13 proximal promoter in endothelial cells (By similarity). When overexpressed, represses anti-oxidant response element (ARE)- mediated transcription. Involved either as an oncogene or as a tumor suppressor, depending on the cell context. Binds to the ARE sites of detoxifying enzyme gene promoters. {ECO:0000250, ECO:0000269|PubMed:12149651, ECO:0000269|PubMed:14998494, ECO:0000269|PubMed:15007382, ECO:0000269|PubMed:16247450, ECO:0000269|PubMed:19143053}.;
Disease
DISEASE: Note=A chromosomal aberration involving MAF is found in some forms of multiple myeloma (MM). Translocation t(14;16)(q32.3;q23) with an IgH locus.; DISEASE: Cataract 21, multiple types (CTRCT21) [MIM:610202]: An opacification of the crystalline lens of the eye that frequently results in visual impairment or blindness. Opacities vary in morphology, are often confined to a portion of the lens, and may be static or progressive. In general, the more posteriorly located and dense an opacity, the greater the impact on visual function. CTRCT21 includes cerulean and pulverulent cataracts. Cerulean cataracts are characterized by peripheral bluish and white opacifications organized in concentric layers with occasional central lesions arranged radially. The opacities are observed in the superficial layers of the fetal nucleus as well as the adult nucleus of the lens. Involvement is usually bilateral. Visual acuity is only mildly reduced in childhood. In adulthood, the opacifications may progress, making lens extraction necessary. Histologically the lesions are described as fusiform cavities between lens fibers which contain a deeply staining granular material. Although the lesions may take on various colors, a dull blue is the most common appearance and is responsible for the designation cerulean cataract. Pulverulent cataracts are characterized by a dust-like, 'pulverised' appearance of the opacities which can be found in any part of the lens. In some cases cataract is associated with microcornea without any other systemic anomaly or dysmorphism. Microcornea is defined by a corneal diameter inferior to 10 mm in both meridians in an otherwise normal eye. {ECO:0000269|PubMed:11772997, ECO:0000269|PubMed:16470690, ECO:0000269|PubMed:24664492}. Note=The disease is caused by mutations affecting the gene represented in this entry.; DISEASE: Ayme-Gripp syndrome (AYGRP) [MIM:601088]: A multisystem disorder characterized by congenital cataracts, sensorineural deafness, intellectual disability, seizures, brachycephaly, distinctive flat facial appearance, skeletal anomalies, mammary gland hypoplasia, and reduced growth. {ECO:0000269|PubMed:25865493}. Note=The disease is caused by mutations affecting the gene represented in this entry.;

Essentials

Essential (CRISPR)
N
Essential (CRISPR2)
N
Essential (gene trap)
N
Indispensability pred.
E
Indispensability score
0.801

Gene Damage Prediction

AllRecessiveDominant
MendelianMediumMediumMedium
Primary ImmunodeficiencyMediumMediumMedium
CancerMediumMediumMedium
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